Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4873g00010 ATGGAGGCGAAACCCCACCAACCATGCGCGGCTTGCAGAATGCTTCGCCGGAGATGTGACGCCAAGTGCCTCCTCGCTCCATACTTCCCGGCCGACCAGCTTGACAAGTTCGCCGTCGTCCACAGAGTCTTCGGCGCCAGCAACGTTATCAAAATGATTCAGATGGTGGAGGAGACGAAGAGGGAGGATGCGGTGAAGGCGATAGTGTACGAGGCAATGGCGAGGGTGAGGGATCCGGTGTATGGCAGCGCAGGAGCCATCCAGCAGTTGCAGAAGATGGTTCAAGAGCTCAAGATGGAGGTGGAAACCATGAACGCTAGGGTTTCAGAGGTGCAAGAACAGAGAGATCAGTTGCTCATGAATATTGCTCATACGAATCTTCTTCAACATCACCACCAACATGATGTTATTGATCTTGTTCCTCATCACCATCATCAGTTTCCCATCAATGTCCAAGACCCTTTCTCTGATGATCTTTACGATGCTTTTTCGCTAGATCCAATGGATCAATTCCCTCTGCGAGGCGATTGGGTCTTGTAG 540 0.513 MEAKPHQPCAACRMLRRRCDAKCLLAPYFPADQLDKFAVVHRVFGASNVIKMIQMVEETKREDAVKAIVYEAMARVRDPVYGSAGAIQQLQKMVQELKMEVETMNARVSEVQEQRDQLLMNIAHTNLLQHHHQHDVIDLVPHHHHQFPINVQDPFSDDLYDAFSLDPMDQFPLRGDWVL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4873g00010 179 SUPERFAMILY Spectrin repeat 69 133 - -
Pral4873g00010 179 Coils Coil 87 121 - -
Pral4873g00010 179 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Pral4873g00010 179 Pfam Lateral organ boundaries (LOB) domain 8 104 IPR004883 -
Pral4873g00010 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4873g00010 Pral-Chr4873 67971 68916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4873g00010 8 136 AS2 family AT1G07900 49.612 5.59e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pral4873g00010 LOB 2.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4873g00010 - - tcc:18613955 193.741