Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4873g00001 ATGGAGCCAACACCTCCCTGCACTCGCGACGATGACCTAACAGCCGCTGTCTCCTCCGCCGCCATCGAGCCAGTTGACAAATCTGATAACTCAAGAGTCGGAGGCACGCGCCACCCAGTCTACCGGGGTGTTCGTAAGCGGCGTTGGGGAAAATGGGTGTCGGAAATCCGAGAGCCGCGCAAGAAATCGCGAATATGGCTGGGGTCATTTCCGGTGCCGGAGATGGCAGCCAGGGCATATGACGTGGCGGCGTACTGCTTGAAAGGCAGGAAGGCGCAGCTCAATTTCCCCGACGAGGTCGAGCTGTTGCCGCGGCCGTCCACATGTGCCGCGAGAGATATCCAGGAGGCGGCAGCTAAGGCGGCTCATGCAATGAAAGCCTCCAAGAAGAAGAATAGCATCATGTCCGACGGATACGGAGACGGCGACAGCGGGGGAGATGATTTTTGGGGCGAGATTGAATTGCCAGAGCTGATGAACAGCGGGTGTTTCTGGAGCTCTCCGAGTGGGTCATCGTGGGCTCAATCCGGCGACATCACGGCGTGGCCGGAGATGGAGGTTCCGACGCAGCAGCAACCATTCATGGCGTGCTTATAA 597 0.5879 MEPTPPCTRDDDLTAAVSSAAIEPVDKSDNSRVGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDEVELLPRPSTCAARDIQEAAAKAAHAMKASKKKNSIMSDGYGDGDSGGDDFWGEIELPELMNSGCFWSSPSGSSWAQSGDITAWPEMEVPTQQQPFMACL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4873g00001 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 28 136 - -
Pral4873g00001 198 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Pral4873g00001 198 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Pral4873g00001 198 PRINTS Ethylene responsive element binding protein signature 79 99 IPR001471 GO:0003700|GO:0006355
Pral4873g00001 198 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Pral4873g00001 198 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Pral4873g00001 198 Pfam AP2 domain 39 89 IPR001471 GO:0003700|GO:0006355
Pral4873g00001 198 SUPERFAMILY DNA-binding domain 40 99 IPR016177 GO:0003677
Pral4873g00001 198 MobiDBLite consensus disorder prediction 1 38 - -
Pral4873g00001 198 FunFam Ethylene-responsive transcription factor 2 39 98 - -
Pral4873g00001 198 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4873g00001 Pral-Chr4873 22022 22797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4873g00001 4 198 AP2-EREBP Transcription Factor Family AT1G01250 57.500 4.27e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4873g00001 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4873g00001 K09286 - qsa:O6P43_017799 247.669