Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4872g00001 ATGGAATCTGAAACTCGACAGAAAATTGAGGAAACGGTGCTGGATATACTGAAGAATGCCAACATTGATGAAGCGACTGAGTTCACAATCCGACTCGCGGCCTCGGAGCGGCTCGGGATGGATCTTTCTGACTTGGAACACAAGCTGCTTGTGAGAGGAATTGTAGAGTCGTATCTGCTCGCTATCGCCGAGGAAGAAGGTGGAAGGGTCCCCGCATCTGAGCTGAGTGCTCCACAAGAGACTAGAGAGGTGATGCAGTATGAGCAAGAGGCGAAGCCAAACAAGGAGGTTTTGGGGGACTCGGAGCGCATAATTTGCCAGCTATCAAACAAAAGGAATGTGGTGGTTCATGATTTCAAGGGAAAGTTAGTCTCAATCAGGGACTTTTCAAAAGATGGAAAACAGCTTCCTTCAGCTAAAGGGATAAGTTTGCCGACTGAGCAATGGTCTGCATTCAAGAAAAGTGTCCCTGCTATAGAGGAGGCTATTACAAAGATGGAAGCAAAGTTGAGACCCGACGTTCATCATAAGCAAAATGGAGATGTGCTGAACCCAGTTGATGGGAAGCAAAATGGAGATGTGCTGAACCCAGTTGATGGGAAGCAAAATGGAGATGAGCTGAACCCAATTCATGGTAAGCAAAATGAAGATGTGCTGAACCCAATTCTTGATGCTGCTCCTCCTGAATCTGTCCCTATTGAAATCAGCCGTTTTGATGGGAAAAATTACCATTTCTGGGTTCAGCAGATGGAATCACTCTTGAAGCAACTAAAGATTGCATATGTTCTCACTGAACTATGCCCAAATGCTACACCAGGACCACACTCAAGCGCTGTAGAAGTTGCTGAAGCCAGGGCGGCAGAAAAGAGGTGGGTGAATGATGATTTCATGTGCCGCCGCAACATCTTGTGCTATTTATCTGATCATCTGTTTAATCAGTATGCAAATAGAAAAATGACTGCTAAAGAACTATGGGAAGAATTAAAACAAGTTTATTTGTATGAGGAATTTGGAACAAAGAGATCACAAGTGAAAAGATACATGGAATTTGAATTCGTTGAGGAAAAATCCATACTTGAGCAAGTCCAAGAATTAAATGCCATTGCAGACTCTGTTGTCTCTGCTGGAATGGTGATCGACGAAAACTTTCACGTCAGTGTCCTCATCTCCAAGCTTCCTCCATCTTGGAAGGATGTTTGCATCAAGCTAATGCGTGAAGAGTATCTACCATTTTGGATGTTAATGGAACGTTTGAGGACGGAGGAAGAATCTCGTAATCCAGTTAAACAAGGGGGCGAACCTTCCAGTAGTAACACAGGCTATCATGAGGCCAGAAAATTGTTTCAAAGAGGTCCAGATACGAGGCTTTCAAGCATGTATGGCCAGAGGAGTAGGCCAGACGTGAATGTCAAGAGTACAATCTGTTATGTCTGTGGCAAGAAAGGGCATCTTGCCAGAAACTGTTGGAGGAGATTTGACAATCAAACCCAAGAAAAAAGAACAGAAGAAAATAGGCCCTCCACACCAGTAGTTTCACGTTAA 1542 0.441 MESETRQKIEETVLDILKNANIDEATEFTIRLAASERLGMDLSDLEHKLLVRGIVESYLLAIAEEEGGRVPASELSAPQETREVMQYEQEAKPNKEVLGDSERIICQLSNKRNVVVHDFKGKXLVSIRDFYXKDGKQLPSAKGISLPTEQWSAFKKSVPAIEEAITKMEAKLRPDVHHKQNGDVLNPVDGKQNGDVLNPVDGKQNGDELNPIHGKQNEDVLNPILDAAPPESVPIEISRFDGKNYHFWVQQMESLLKQLKIAYVLTELCPNATPGPHSSAVEVAEARAAEKRWVNDDFMCRRNILCYLSDHLFNQYANRKMTAKELWEELKQVYLYEEFGTKRSQVKRYMEFEFVEEKSILEQVQELNAIADSVVSAGMVIDENFHVSVLISKLPPSWKDVCIKLMREEYLPFWMLMERLRTEEESRNPVKQGGEPSSSNTGYHEARKLFQRGPDTRLSSMYGQRSRPDVNVKSTICYVCGKKGHLARNCWRRFDNQTQEKRTEENRPSTPVVSR 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4872g00001 515 Pfam gag-polypeptide of LTR copia-type 293 428 - -
Pral4872g00001 515 MobiDBLite consensus disorder prediction 431 445 - -
Pral4872g00001 515 MobiDBLite consensus disorder prediction 425 450 - -
Pral4872g00001 515 FunFam RNA polymerase II transcriptional coactivator KELP 97 169 - -
Pral4872g00001 515 Pfam Zinc knuckle 477 490 IPR001878 GO:0003676|GO:0008270
Pral4872g00001 515 Gene3D - 452 510 - -
Pral4872g00001 515 SUPERFAMILY Retrovirus zinc finger-like domains 464 496 IPR036875 GO:0003676|GO:0008270
Pral4872g00001 515 SUPERFAMILY ssDNA-binding transcriptional regulator domain 105 167 IPR009044 GO:0003677|GO:0006355
Pral4872g00001 515 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
Pral4872g00001 515 Pfam Transcriptional Coactivator p15 (PC4) 106 156 IPR003173 GO:0003677|GO:0006355
Pral4872g00001 515 Pfam DEK C terminal domain 4 59 IPR014876 -
Pral4872g00001 515 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 170 IPR045125 GO:0003713|GO:0060261
Pral4872g00001 515 SMART c2hcfinal6 476 492 IPR001878 GO:0003676|GO:0008270
Pral4872g00001 515 MobiDBLite consensus disorder prediction 178 215 - -
Pral4872g00001 515 Gene3D Transcriptional Coactivator Pc4; Chain A 98 173 IPR009044 GO:0003677|GO:0006355
Pral4872g00001 515 ProSiteProfiles Zinc finger CCHC-type profile. 477 490 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4872g00001 Pral-Chr4872 839 4400 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Pral4872g00001 Retrotran_gag_2 1.2e-15 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4872g00001 - - qsa:O6P43_017796 573.548