Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4864g00061 ATGGCGTCCAAGCTCTTAGCTTTGACCTGCATCCGCAGTAAAGGATGGGATCGGCTATCGTCGCGGCCTCATTACCCGTCGATGCCGACGTACCCAAAGGGAGTGACGGCGGAAGAGGGGAGCAGCGTGGAGGGGTCAGAAGCCAAGGCCCTTTTTTCCGTCGTCGGAATGGCATGCTCTGCCTGCGCCGGCTCCGTCGAGAAAGCGATCAAGCGCCTACCTGGAATTCGTGAAGCGGTCGTGGATGTTCTGAATAATCAAGCTTTCGTTCTCTTCCACCCCACCTACGTTAACGAGGAGACTATTCGCGAGGCCATTGAAGATGCTGGGTTTGAAGCTACATTGCTAAGAGATGAGATTAATGAGAGATCCGTTCAAGTATGTCGCATAATCGTAACTGGAATGACTTGCACTTCTTGCTCCTCCACTGTTGAATCAGCTCTGCAAGCAATTCCAGGCGTGCTGAAAGCTCAAGTAGCTTTGGCAACTTATGAAGCGGAAGTACACTACAATCCTAATATTGTCAACCACAATCAAATTCTGGAAGCCATAGAAGACACTGGATTTGAAGCCACACTTATTAGTTCAGGTGAAGACATAAGCAAAGTTGACCTCCAAGTTGACGGGATACAAAATGAAGATTTTATGAGAATCGTCCATACTTCTCTTCAAGCTCTCCCAGGAGTACAGGATATAGAATCATTTCCTGAGCTGAACAAAATATCAGTTTCTTTCAAACCAGACATGACAGGACCTAGGAATTTTATCAACATAATTGAAAGAATTGAGTCCGGACGTTTCAAGGCTAAATTATTTCCTCAGCAAGGAGAGCGAAGAGATACTCACAGACGGGAGGAAATTAAACAATATTATAGATCCTTCTTGTGGAGTTTGGTTTTTACTGTTCCAGTCTTTTTAACCTCTATGGTTCTTATGTATATCCCGGGGATTAAGCATGGACTTGACACCAAAGTTGTCAATATGCTTACAGCGGGACAGATTTTAAGATGGGTGCTTTCCACGCCAGTACAGTTCATAATAGGCCGGAGATTCTACTCTGGATCTTACAAAGCGTTACGCCATGGTTCTGCTAACATGGACGTCTTGATTGCCTTGGGAACAAATGCAGCATACTTCTACTCAGTGTACTCTGTACTGAGAGCTGCTGGTTCCCCACATTTCGAAGGGACTGATTTCTTTGAGACTAGCGCCATGCTTATTTCATTTATTCTGCTGGGAAAGTATCTGGAAGTCTTCACCAAGGGGAAGACATCTAATGCCATCGCCAAGCTCATGAACTTGACCCCTGACACAGCTATGTTGCTGAGCCTGGACAATGAAGGGAATGTTATCAATGAAGAAGAGATTGACAGTCGATTGATTCAAAAGAATGATCTGATTAAAATCATTCCCGGGGCAAAAGTAGCCTCTGATGGATTTGTCGTCTGGGGGCAGAGCCACGTGAACGAGAGCATGATAACTGGGGAGGCACGTCCTGTTGCAAAGAGAAAGGGTGATCCTGTTATTGGAGGAACTGTGAATGAGAATGGAGTGTTGCATGTCAGGGCAACAAGAGTTGGATCAGAGAGTGCTCTTTCACAGATTGTTCGACTAGTTGAGTCAGCACAGTTGGCCAAGGCTCCTGTGCAGAAGTTTGCTGATCGCATTTCGAAATTCTTTGTGCCTTTGGTCATTTTAATCTCTTTCATCACTTTTCTTGCATGGTTCTTAGCTGGAAGGTTCCATGCTTACCCGAAGTCTTGGATACCATCTTCCATGGATAGTTTTGAGCTTGCTTTACAGTTTGCCATCTCTGTCATGGTCATAGCTTGCCCCTGTGCCCTAGGTCTAGCCACACCAACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAAGGTGTACTAATCAAAGGAGGGCAAGCATTAGAAAGTACACATAAGGTGAAATGCATTGTCTTCGACAAGACTGGTACTCTCACCATTGGGAAGCCCGTGGTTGTAAACACTAAACTATTGACTAATATGGTACTCCAAGAATTCTATGAACTTGTAGCAGGTGCTGAGGTGAACAGTGAGCATCCATTGGCCAAGGCCATTGTTGAGTATGCCAAGAAATTTAAAGATGAAGAGAACCCTGCTTGGCCTGAAACTCGAGATTTTGTCTCCATACCTGGCCATGGAGTGAAAGCCATTGTTGGAAAAAAGGAAATTATTGTGGGTAACAAGAGCTTGTTGGCCGACCATAACATCGCAGTTCCTTTGGAGGCAGAAGATATACTGGCTGAGGCTGAGGGGATGGCTCAAACTGGAATATTGGTATCTATTAATGGGGAAGTGGCTGGAGTTGTAGCAGTATCTGATCCATTGAAACCGGGTGCTCAAGAAGTGATCTCAATTCTCAAGTCCATGAACATCAAAAGCATCTTAGTAACTGGTGACAACCGGGGAACTGCTAATTCCATAGCAAGGGAAGTTGGGATTGAAGAAGTCTTTGCTGAGACCAAACCAGAGCAGAAAGCAGAGAAAGTGAAGGAGTTGCAGGCTGATGGATACACAGTGGCAATGGTTGGGGATGGCATCAACGATTCACCAGCGCTTGTAGCAGCAAATGTGGGAATGGCAATTGGTGCAGGAACAGACATAGCTATTGAGGCTGCTGACATTGTTCTGATGAAGAGCAACTTGGAAGATGTGATAACTGCCATTGATCTCTCCAGAAGAACATTTTTCCACATTCGTCTCAATTACATTTGGGCTCTGGGTTATAATCTTCTTGGCATCCCAATCGCTGCTGGAGTTCTTGTCCCTTTTACAGGACTCCGATTGCCTCCTTGGATTGCTGGGGCTGCAATGGCCGCCTCATCCGTGAGTGTTGTTTGTTGTTCTCTATTGCTGAAATATTACAGGAGGCCTAAGAAACTGGACAAGCTTGAGATTCGGGGCATTAAGATAGAATGA 2961 0.4546 MASKLLALTCIRSKGWDRLSSRPHYPSMPTYPKGVTAEEGSSVEGSEAKALFSVVGMACSACAGSVEKAIKRLPGIREAVVDVLNNQAFVLFHPTYVNEETIREAIEDAGFEATLLRDEINERSVQVCRIIVTGMTCTSCSSTVESALQAIPGVLKAQVALATYEAEVHYNPNIVNHNQILEAIEDTGFEATLISSGEDISKVDLQVDGIQNEDFMRIVHTSLQALPGVQDIESFPELNKISVSFKPDMTGPRNFINIIERIESGRFKAKLFPQQGERRDTHRREEIKQYYRSFLWSLVFTVPVFLTSMVLMYIPGIKHGLDTKVVNMLTAGQILRWVLSTPVQFIIGRRFYSGSYKALRHGSANMDVLIALGTNAAYFYSVYSVLRAAGSPHFEGTDFFETSAMLISFILLGKYLEVFTKGKTSNAIAKLMNLTPDTAMLLSLDNEGNVINEEEIDSRLIQKNDLIKIIPGAKVASDGFVVWGQSHVNESMITGEARPVAKRKGDPVIGGTVNENGVLHVRATRVGSESALSQIVRLVESAQLAKAPVQKFADRISKFFVPLVILISFITFLAWFLAGRFHAYPKSWIPSSMDSFELALQFAISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESTHKVKCIVFDKTGTLTIGKPVVVNTKLLTNMVLQEFYELVAGAEVNSEHPLAKAIVEYAKKFKDEENPAWPETRDFVSIPGHGVKAIVGKKEIIVGNKSLLADHNIAVPLEAEDILAEAEGMAQTGILVSINGEVAGVVAVSDPLKPGAQEVISILKSMNIKSILVTGDNRGTANSIAREVGIEEVFAETKPEQKAEKVKELQADGYTVAMVGDGINDSPALVAANVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRRTFFHIRLNYIWALGYNLLGIPIAAGVLVPFTGLRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPKKLDKLEIRGIKIE 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4864g00061 986 SUPERFAMILY Calcium ATPase, transduction domain A 453 539 IPR008250 -
Pral4864g00061 986 PRINTS Copper-transporting ATPase 1 signature 104 124 - -
Pral4864g00061 986 PRINTS Copper-transporting ATPase 1 signature 49 74 - -
Pral4864g00061 986 PRINTS Copper-transporting ATPase 1 signature 75 98 - -
Pral4864g00061 986 PRINTS Copper-transporting ATPase 1 signature 150 171 - -
Pral4864g00061 986 SFLD p-type atpase 635 909 IPR044492 -
Pral4864g00061 986 CDD HMA 52 114 IPR006121 GO:0046872
Pral4864g00061 986 ProSiteProfiles Heavy-metal-associated domain profile. 201 267 IPR006121 GO:0046872
Pral4864g00061 986 Gene3D - 126 196 - -
Pral4864g00061 986 Gene3D - 48 120 - -
Pral4864g00061 986 FunFam Copper-transporting ATPase 1, putative 421 543 - -
Pral4864g00061 986 FunFam Probable copper-transporting ATPase HMA5 763 914 - -
Pral4864g00061 986 Gene3D - 660 736 IPR023299 GO:0000166
Pral4864g00061 986 Gene3D - 737 788 IPR023299 GO:0000166
Pral4864g00061 986 CDD HMA 132 192 IPR006121 GO:0046872
Pral4864g00061 986 NCBIfam copper ion binding protein 130 191 IPR006122 GO:0005507
Pral4864g00061 986 NCBIfam copper ion binding protein 51 113 IPR006122 GO:0005507
Pral4864g00061 986 Pfam haloacid dehalogenase-like hydrolase 649 871 - -
Pral4864g00061 986 SUPERFAMILY Calcium ATPase, transmembrane domain M 399 645 IPR023298 -
Pral4864g00061 986 FunFam Copper-transporting ATPase HMA5 47 118 - -
Pral4864g00061 986 NCBIfam HAD-IC family P-type ATPase 406 935 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral4864g00061 986 Pfam Heavy-metal-associated domain 130 190 IPR006121 GO:0046872
Pral4864g00061 986 Pfam Heavy-metal-associated domain 52 112 IPR006121 GO:0046872
Pral4864g00061 986 Pfam E1-E2 ATPase 436 631 - -
Pral4864g00061 986 SFLD C1.7: P-type atpase like 635 909 - -
Pral4864g00061 986 ProSitePatterns E1-E2 ATPases phosphorylation site. 655 661 IPR018303 -
Pral4864g00061 986 PRINTS P-type cation-transporting ATPase superfamily signature 880 892 - -
Pral4864g00061 986 PRINTS P-type cation-transporting ATPase superfamily signature 804 814 - -
Pral4864g00061 986 PRINTS P-type cation-transporting ATPase superfamily signature 489 503 - -
Pral4864g00061 986 PRINTS P-type cation-transporting ATPase superfamily signature 857 876 - -
Pral4864g00061 986 PRINTS P-type cation-transporting ATPase superfamily signature 653 667 - -
Pral4864g00061 986 PRINTS P-type cation-transporting ATPase superfamily signature 782 793 - -
Pral4864g00061 986 ProSitePatterns Heavy-metal-associated domain. 54 83 IPR017969 GO:0046872
Pral4864g00061 986 ProSitePatterns Heavy-metal-associated domain. 132 161 IPR017969 GO:0046872
Pral4864g00061 986 ProSiteProfiles Heavy-metal-associated domain profile. 48 114 IPR006121 GO:0046872
Pral4864g00061 986 NCBIfam heavy metal translocating P-type ATPase 366 966 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pral4864g00061 986 ProSiteProfiles Heavy-metal-associated domain profile. 126 192 IPR006121 GO:0046872
Pral4864g00061 986 SUPERFAMILY HMA, heavy metal-associated domain 124 197 IPR036163 GO:0046872
Pral4864g00061 986 CDD P-type_ATPase_Cu-like 292 967 - -
Pral4864g00061 986 SUPERFAMILY HMA, heavy metal-associated domain 197 262 IPR036163 GO:0046872
Pral4864g00061 986 Gene3D - 421 543 - -
Pral4864g00061 986 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 983 - -
Pral4864g00061 986 FunFam Copper-transporting ATPase HMA5 125 196 - -
Pral4864g00061 986 SUPERFAMILY HMA, heavy metal-associated domain 46 117 IPR036163 GO:0046872
Pral4864g00061 986 Gene3D - 620 914 IPR023214 -
Pral4864g00061 986 SUPERFAMILY HAD-like 652 963 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4864g00061 Pral-Chr4864 288181 293443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4864g00061 1 986 Primary Pumps ATPases AT1G63440 73.896 0.0 1492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4864g00061 K17686 - qsa:O6P43_034232 1592.02