Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4864g00041 ATGGTACCAGCGAACCTGAAGAAACAGCTCGCCTTGGCTGTGAGAAGCATCCAGTGGAGCTACGCAGTCTACTGGTCTGGTTCACCTAACAACCCCGGGGCGTTCGAGTGGGGTGAAGGGTACTACAATGGAGACATAAAGACGAGGAAAACAAGCCAAGCAGTAGAACTGAATTCTGACCAAATAGGTTTACGGAGAAGTGAGCAGCTCAGAGATCTATATGAGTCCCTCGCAACTGCAGAATCCAGTCCACAAGCGAAAAGGCCTTCAGCTGCATTATCACCTGAGGACCTCACTGATACAGAGTGGTATTATTTGGTGTGCATGTCATTTGTATTCAACATTGGTCAAGGGTTGCCCGGAAGAACTCTGGCAAAAGGCCAACCCATTTGGTTGTACAATGCCCATTTGGCTGATAGTAGAATTTTTGGTCGCTCTCTTCTGGCAAAGAGTGCATCCATTCAGACAGTGGTATGCTTTCCTTTTCTGGATGGCGTTCTTGAGCTAGGCACAACTGATCTGGTCTCAGAGGACCTCAGTCTCATTCAACGCATGAGAACTTCCTACTTGGATATTTTAGATGCTAAGGCTCGCAAGGACTCTGTAGTTGCATACAATACGGGAGATGGTGAAGAAATTGCTGGTGCCGTATTGGATCATAATGCTTTTGATGTAAAATTAACTCCTGAGTCTGAGTATGAAGTAGCCAATGCAACTTCTCCGAATAATAGTTCAAATGAGTTTCAAGCCAATCAACAAGCAGATGAGAGATTCATGGTTGAAAGAATAAATGGTGTTGCTTCCCATGTCCAAAGCTGGCAAGTAATGGAGGATGAGTTGAGTAATGGTGCCCATACTTCCATGAATACTAGCGACTGTATTTCTCAAACGTTTGCTGGTTCTGAAAAGAATGCTTCTGTTCCCAAGGGTGGTCATAGTGAGCAAGATCTTCAAGAAGGCAAAAACACAAAAACGACCGTGGTAGATGTTCATAGTGATGAGTGGCATTATCAGAAAATTCTTTCTTCTCTTTTTAAAAGCTCAGACCAATTAATTATGGGAGCACACTTTCAAAACTCTCATCGTGAATCTAGGTTTATCAGTTGGAAGAAAGAAGGATCAATGGGTTGTCAATGGCCAGGAGGCGCAACCCACCAGAAAATATTGAAGAAGATATTGTTTGAAGTTCCTCGTATGCACACAGAATGGTTGCTTGAATCTCAAGAAGAAAATGATTATAAAGAGGGAATGAGACCTGAAGCTGATGAAATTGGCTTGAACCATGTACTGTCTGAAAGAAAGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAAATCAATGGTTCCTTTGATTACTAGGGATGACAAAGTTTCAATACTAGATGAGGCAATAGAATACCTTAAAAAGCTGGAGAAAAAGGTGAGAGAGTTGGAAGCTCGCAGAGAGTCCAAAGATTCAGAGACTAGGACTAAAAGAACGCCTCAAGATGTGGTGGAAAGGACCTGTGACAATTATTGCAACAACAGATCTGATAATGGCAAGAAGCCAGCGATGAACAAAAGGAAGGCTTGTGACATTGATGAGACAGAGATTGATTCAGTTCGTCTAAAAGATATTTCTAATAATGTTACTATCTGCATGAACGACAATGATGTTTTGGTTGAATTGAAGTGTCCTCGGAGAGAAGGAGTTCTACTAGAAATAATGGAAGCAGTCAGCAATCTTCATTTAGATTTTCATTCAGTTCATTCATCAGAAGCTGATGGGATTCTCCATTTAACCATAAAATCCAAGATTACAGGAGCAGCTTTTACCTCAGCAAAAAAGATCAAACAAGCACTCCTCAAGGTAGCTTGGAAGTGTTGA 1872 0.4172 MVPANLKKQLALAVRSIQWSYAVYWSGSPNNPGAFEWGEGYYNGDIKTRKTSQAVELNSDQIGLRRSEQLRDLYESLATAESSPQAKRPSAALSPEDLTDTEWYYLVCMSFVFNIGQGLPGRTLAKGQPIWLYNAHLADSRIFGRSLLAKSASIQTVVCFPFLDGVLELGTTDLVSEDLSLIQRMRTSYLDILDAKARKDSVVAYNTGDGEEIAGAVLDHNAFDVKLTPESEYEVANATSPNNSSNEFQANQQADERFMVERINGVASHVQSWQVMEDELSNGAHTSMNTSDCISQTFAGSEKNASVPKGGHSEQDLQEGKNTKTTVVDVHSDEWHYQKILSSLFKSSDQLIMGAHFQNSHRESRFISWKKEGSMGCQWPGGATHQKILKKILFEVPRMHTEWLLESQEENDYKEGMRPEADEIGLNHVLSERKRRAKLNERFLTLKSMVPLITRDDKVSILDEAIEYLKKLEKKVRELEARRESKDSETRTKRTPQDVVERTCDNYCNNRSDNGKKPAMNKRKACDIDETEIDSVRLKDISNNVTICMNDNDVLVELKCPRREGVLLEIMEAVSNLHLDFHSVHSSEADGILHLTIKSKITGAAFTSAKKIKQALLKVAWKC 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4864g00041 623 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 423 472 IPR011598 GO:0046983
Pral4864g00041 623 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 188 IPR025610 -
Pral4864g00041 623 Coils Coil 462 489 - -
Pral4864g00041 623 MobiDBLite consensus disorder prediction 300 323 - -
Pral4864g00041 623 Gene3D - 426 497 IPR036638 GO:0046983
Pral4864g00041 623 PANTHER TRANSCRIPTION FACTOR TT8 3 620 - -
Pral4864g00041 623 SMART finulus 429 478 IPR011598 GO:0046983
Pral4864g00041 623 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 426 486 IPR036638 GO:0046983
Pral4864g00041 623 Pfam Helix-loop-helix DNA-binding domain 427 473 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4864g00041 Pral-Chr4864 169952 173908 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4864g00041 2 623 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 48.182 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4864g00041 bHLH-MYC_N 5.8e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4864g00041 - - gmx:100808167 783.867