Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4864g00030 ATGGACACGAAGGAAGATGTGAGGGTCGGAGCAAACAAATTCTCAGAGAGGCAGCCGTTGGGCACGTCTGCTCAGACCGACAAGGACTATAAGGAGCCACCACCGGCACCCTTGTTCGAGCCAGGTGAGCTCAAGTCATGGTCTTTCTACAGAGCCGGTATCGCAGAGTTCGTCGCCACCTTCTTGTTCCTCTACATCACCATCTTGACTGTCATGGGTGTCAAGAGGTCACCAAAGTGTGCCTCTGTTGGCATCCAAGGAATTGCCTGGGCCTTTGGTGGTATGATTTTCGCTCTTGTCTACTGTACTGCTGGAATCTCAGGTGGACACATCAACCCAGCAGTGACCTTTGGTCTGTTCTTGGCAAGGAAGCTGTCCCTCACAAGAGCACTGTTCTACATGGTGATGCAGTGTCTTGGAGCCATATGTGGTGCTGGTGTTGTGAAGGGTTTTGAGGGTAATGCTCGGTATGAGATGTTTAGTGGAGGGGCAAATATGGTAAACCATGGATACACTAAGGGCGATGCTCTTGGAGCTGAGATTGTTGGCACCTTCATCCTTGTCTACACAGTGTTTTCTGCCACTGATGCTAAGAGAAACGCTAGAGACTCTCACGTCCCTCTTTTGGCTCCTCTTCCCATCGGATTTGCTGTGTTCTTGGTGCACTTGGCAACCATTCCCATCACAGGAACAAGTATAAACCCAGCAAGGAGTTTGGGTGCTGCTATCATCTACAACAGGGACGCTGCATGGAATGATCATTGGATATTCTGGGTTGGACCTTTCACTGGAGCTTTCCTTGCTGCTGTATATCACCAGATAGTCATCCGAGCCATTCCTTTCAAGTCTAGGGCTTGA 858 0.4988 MDTKEDVRVGANKFSERQPLGTSAQTDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVKRSPKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFEGNARYEMFSGGANMVNHGYTKGDALGAEIVGTFILVYTVFSATDAKRNARDSHVPLLAPLPIGFAVFLVHLATIPITGTSINPARSLGAAIIYNRDAAWNDHWIFWVGPFTGAFLAAVYHQIVIRAIPFKSRA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4864g00030 285 PRINTS Major intrinsic protein family signature 92 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4864g00030 285 PRINTS Major intrinsic protein family signature 255 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4864g00030 285 PRINTS Major intrinsic protein family signature 215 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4864g00030 285 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4864g00030 285 PRINTS Major intrinsic protein family signature 129 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4864g00030 285 PRINTS Major intrinsic protein family signature 179 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4864g00030 285 Pfam Major intrinsic protein 43 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4864g00030 285 SUPERFAMILY Aquaporin-like 43 277 IPR023271 -
Pral4864g00030 285 CDD MIP 51 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4864g00030 285 FunFam Probable aquaporin PIP1-2 36 285 - -
Pral4864g00030 285 NCBIfam MIP family channel protein 55 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4864g00030 285 ProSitePatterns MIP family signature. 110 118 IPR022357 -
Pral4864g00030 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 280 IPR034294 -
Pral4864g00030 285 Gene3D Glycerol uptake facilitator protein. 36 283 IPR023271 -
Pral4864g00030 285 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4864g00030 Pral-Chr4864 146716 148493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4864g00030 4 285 Major Intrinsic Protein MIP AT3G61430 85.512 1.48e-172 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4864g00030 K09872 - gmx:121174914 531.561