Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral4864g00017 | ATGGGCGGTTGCTGTTGCTGTTGTTCAAGAGAAACCGAACTGAGCGATCCACCAGCGTACTTCTATCCAAGAGCATCAGAGGAGCGTGTTCCTCTATCATCTAATCATGGTTCTGCGTCTGCTTTCTCCCGAGGGCTCCTTGTTGATACTAACCTTGAAACTTCAAGTCCTGACACTTATAGACCACCTCCTGCCCCTGCTCCTTACAGCAACGTTACTTTGGTTGTCACTCAAACTCCACCCGGGGTTCATGAAATTAGTGATAATAAGACTAATACATCCATTCAATCTACAGATTCTAATTCAGCTGAAGAAATAGTTACTAGTGATGGTCATGGAAATATGACCAAGTTGGAAGAGCAGAAAGAACTAGAGGGTAAAGTTCAGAGTGATTTAGAACTGGACCCAGCTAAGGATTCAGAAATTGAACTTCAAAAGCTAGATGAACCTGTCATTTTAGCTGAAGAGGAGGATGTGTGTCCTATCTGTTTAGAAGAGTACGATGATGAGAATCCAAAACTCAACACAAAATGTGATCATCATTTTCACCTTGCTTGCATTCTGGAATGGATGGAAAGAAGTGAAAACTGTCCCGTGTGTGATAAGAATCCTGGTGTTGAATTTGATTACATGTGA | 636 | 0.4198 | MGGCCCCCSRETELSDPPAYFYPRASEERVPLSSNHGSASAFSRGLLVDTNLETSSPDTYRPPPAPAPYSNVTLVVTQTPPGVHEISDNKTNTSIQSTDSNSAEEIVTSDGHGNMTKLEEQKELEGKVQSDLELDPAKDSEIELQKLDEPVILAEEEDVCPICLEEYDDENPKLNTKCDHHFHLACILEWMERSENCPVCDKNPGVEFDYM | 211 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral4864g00017 | 211 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 205 | IPR013083 | - | |
| Pral4864g00017 | 211 | SMART | ring_2 | 160 | 200 | IPR001841 | - | |
| Pral4864g00017 | 211 | Pfam | Ring finger domain | 159 | 200 | IPR001841 | - | |
| Pral4864g00017 | 211 | SUPERFAMILY | RING/U-box | 153 | 203 | - | - | |
| Pral4864g00017 | 211 | ProSiteProfiles | Zinc finger RING-type profile. | 160 | 201 | IPR001841 | - | |
| Pral4864g00017 | 211 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 37 | 202 | - | - | |
| Pral4864g00017 | 211 | CDD | RING-H2_AIRP1-like | 156 | 202 | - | - | |
| Pral4864g00017 | 211 | MobiDBLite | consensus disorder prediction | 82 | 101 | - | - | |
| Pral4864g00017 | 211 | FunFam | Putative E3 ubiquitin-protein ligase RHB1A | 137 | 204 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral4864g00017 | Pral-Chr4864 | 79853 | 82754 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral4864g00017 | 1 | 202 | C3H Transcription Factor Family | AT5G41350 | 52.174 | 4.05e-60 | 186 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral4864g00017 | - | - | gmx:100816369 | 276.559 |