Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4860g00015 ATGGAAAACCAAGTGATGTCATTAAAAGAGAAAGGAATTGCTGCAGAATTTCTCTCCTCAACCCAAACAGCCGATGCAAAAAATAAGATTTATGAGGACCTTGATTCTGCAAAGCCTTCTATAAGGCTGCTGTATGTCACTCCAGAATTGATAGCGACGCTGGGTTTTATGTCAAAGCTGAAAAAGATATATGCTAAAGGGTTGTTGAATCTCATTGCCATAGATGAGGCACATTGCATCTCAACTTGGGGCCATGATTTCAGGCCTAGCTATCGTAAGCTTTCAACCTTGAGAGACCAACTTTTGGATGTGCCAATGTTAGCTCTGACTGCTACAGCTGCTCCTAAGGTACAGAAGGATGTGGTAAAATCACTGAACATGCAAAATCCGTTAATACTAAAGTCATCTTTTAATCGTCCTAATATATACTATGAAGTTCGATACAAAGATCTTTTGGAAGATGCTTATACTGATCTGTCCAATATGCTAAAATCTAAGGGAAATGTCTGTGCAATTGTTTACTGCCTTGAGCGTTCAACATGTGATGACCTGGCAGCTCATCTAATGCAAAATGGCATTTCCTGTGCTGCCTATCATGCAGGGTTGAATAATAAATTGCGGACCTCTGTGTTGGATAATTGGATTTCTTCCAAGATACAAGTTGTTGTTGCCACTGTTGCTTTTGGAATGGGCATTGACAGAAAGGATGTCAGAATTGTGTGCCACTTTAATATTCCAAAGTCAATGGAAGCATTCTATCAGGAGTCAGGCAGGGCAGGTCGTGATCAGTTGCCATCTACAAGTTTGTTGTACTATGGAGTAGATGATCGCAAAAGAATGGAATTTATATTGAGTAAATCCCGAAGCAATAAGTCACAGTCATCAAGCTCTCAGGAAGAATCATCCGAAAGGTCCCTAGCTGACTTTAGTCAGATGATTGAATACTGTGAAGGATCTGGATGCCGAAGGAAAAAGATTCTTGAGAGTTTTGGGGAGCAGGTCACTGCATCATTATGTGGAAAATCATGTGATGCCTGCAGACATCCAAACTTAATTGCTAGATGTTTGGAGGACGTAGCAACTGCCCGTTCTTTACACCCAAAAAATAATTCCTCTCGAGTCTTTATCACCAGTTCAACAGGTGGAGTTGGCGAAGAACAAGTATCTGAATTCTGGAATCGTGATGAAGAAGCAAGTGGATCGGATGAAGATATATCTGATTCAGATGATGGTGCTGAGATTGTCAACAACCTAACCGGATCAAAGTCCAAATCCAGATTGGGAGTGAATGAAAAAATCGCATTGTTACAACGTGCTGAAGAAAACCACTATCAAAATGAAAATGCTGATAAACAGAGAAACAAGGTTGACAAGAATGCTATATCTGATACAATAAGAGGAGCAACCAGGGAAAGACTGCAAAATTCTCTAAAGCAGGCCCAGCAACGGCTCCAAAACTTGAAGATTGAAGTGGAATCCTCGGCATCTTTACTTGAAGATGAATGCTACAAGAAGTATGGGAAGGTTGGCAAATCATTCTATTATTCACAGGTGGCAAGTACTGTTAGGTGGCTGTCAACTACAAATTCAACCGATCTGATAAGTCGCCTTGGAGGGACTAACGCTTCCTCATCAACGATTGTATTGTCTGAAGCTGAAAATCCCCTTACAACGCCACCTTTGTCAGATCCTTCTGGGAAAGAAGGGGCTGGCAACGGGCCTCATGCCACTGCTTACTTAGAAACCTCCCCACTCGACTTACCGATCGAAAGTTCATCAATAGAGACAAAGTTGCCGCCAATTCCATCATTCTCAGAGTTTGTTAACAGTAGGAACGTAAAAAGTCACCAAACAAGAACCAAACAAGAGCACTCACCAAGAGTGGAGAAGAGGTCAAGGCATAAGTAG 1908 0.4156 MENQVMSLKEKGIAAEFLSSTQTADAKNKIYEDLDSAKPSIRLLYVTPELIATLGFMSKLKKIYAKGLLNLIAIDEAHCISTWGHDFRPSYRKLSTLRDQLLDVPMLALTATAAPKVQKDVVKSLNMQNPLILKSSFNRPNIYYEVRYKDLLEDAYTDLSNMLKSKGNVCAIVYCLERSTCDDLAAHLMQNGISCAAYHAGLNNKLRTSVLDNWISSKIQVVVATVAFGMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGVDDRKRMEFILSKSRSNKSQSSSSQEESSERSLADFSQMIEYCEGSGCRRKKILESFGEQVTASLCGKSCDACRHPNLIARCLEDVATARSLHPKNNSSRVFITSSTGGVGEEQVSEFWNRDEEASGSDEDISDSDDGAEIVNNLTGSKSKSRLGVNEKIALLQRAEENHYQNENADKQRNKVDKNAISDTIRGATRERLQNSLKQAQQRLQNLKIEVESSASLLEDECYKKYGKVGKSFYYSQVASTVRWLSTTNSTDLISRLGGTNASSSTIVLSEAENPLTTPPLSDPSGKEGAGNGPHATAYLETSPLDLPIESSSIETKLPPIPSFSEFVNSRNVKSHQTRTKQEHSPRVEKRSRHK 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4860g00015 635 NCBIfam RecQ family ATP-dependent DNA helicase 1 350 IPR004589 GO:0004386|GO:0006310
Pral4860g00015 635 FunFam RecQ family DNA helicase 139 364 - -
Pral4860g00015 635 Coils Coil 470 497 - -
Pral4860g00015 635 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1 488 - -
Pral4860g00015 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 132 IPR027417 -
Pral4860g00015 635 MobiDBLite consensus disorder prediction 286 305 - -
Pral4860g00015 635 CDD SF2_C_RecQ 139 272 - -
Pral4860g00015 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 360 IPR027417 -
Pral4860g00015 635 Gene3D - 139 364 IPR027417 -
Pral4860g00015 635 Pfam Helicase conserved C-terminal domain 159 261 IPR001650 -
Pral4860g00015 635 SMART helicmild6 182 263 IPR001650 -
Pral4860g00015 635 CDD DEXHc_RecQ 1 138 - -
Pral4860g00015 635 MobiDBLite consensus disorder prediction 393 412 - -
Pral4860g00015 635 Gene3D - 1 138 IPR027417 -
Pral4860g00015 635 MobiDBLite consensus disorder prediction 586 615 - -
Pral4860g00015 635 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 151 303 IPR001650 -
Pral4860g00015 635 MobiDBLite consensus disorder prediction 285 305 - -
Pral4860g00015 635 Pfam RecQ zinc-binding 276 347 IPR032284 -
Pral4860g00015 635 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 131 IPR014001 -
Pral4860g00015 635 MobiDBLite consensus disorder prediction 548 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4860g00015 Pral-Chr4860 393117 401260 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4860g00015 171 278 Eukaryotic Initiation Factors Gene Family AT3G19760 22.222 5.01e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4860g00015 K10901 - gmx:100819601 912.524