Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4860g00014 ATGTCATTAAAAGAGAAAGGAATTGCTGCAGAATTTCTCTCCTCAACCCAAACAGCCGATGCAAAAAATAAGATTTATGAGGACCTTGATTCTGCAAAGCCTTCTATAAGGCTGCTGTATGTCACTCCAGAATTGATAGCGACGCTGGGTTTTATGTCAAAGCTGAAAAAGATATATGCTAAAGGGTTGTTGAATCTCATTGCCATAGATGAGGCACATTGCATCTCAACTTGGGGCCATGATTTCAGGCCTAGCTATCGTAAGCTTTCAACCTTGAGAGACCAACTTTTGGATGTGCCAATGTTAGCTCTGACTGCTACAGCTGCTCCTAAGGTACAGAAGGATGTGGTAAAATCACTGAACATGCAAAATCCGTTAATACTAAAGTCATCTTTTAATCGTCCTAATATATACTATGAAGTTCGATACAAAGATCTTTTGGAAGATGCTTATACTGATCTGTCCAATATGCTAAAATCTAAGGGAAATGTCTGTGCAATTGTTTACTGCCTTGAGCGTTCAACATGTGATGACCTGGCAGCTCATCTAATGCAAAATGGCATTTCCTGTGCTGCCTATCATGCAGGGTTGAATAATAAATTGCGGACCTCTGTGTTGGATAATTGGATTTCTTCCAAGATACAAGTTGTTGTTGCCACTGTTGCTTTTGGAATGGGCATTGACAGAAAGGATGTCAGAATTGTGTGCCACTTTAATATTCCAAAGTCAATGGAAGCATTCTATCAGGAGTCAGGCAGGGCAGGTCGTGATCAGTTGCCATCTACAAGTTTGTTGTACTATGGAGTAGATGATCGCAAAAGAATGGAATTTATATTGAGTAAATCCCGAAGCAATAAGTCACAGTCATCAAGCTCTCAGGAAGAATCATCCGAAAGGTCCCTAGCTGACTTTAGTCAGATGATTGAATACTGTGAAGGATCTGGATGCCGAAGGAAAAAGATTCTTGAGAGTTTTGGGGAGCAGGTCACTGCATCATTATGTGGAAAATCATGTGATGCCTGCAGACATCCAAACTTAATTGCTAGATGTTTGGAGGACGTAGCAACTGCCCGTTCTTTACACCCAAAAAATAATTCCTCTCGAGTCTTTATCACCAGTTCAACAGGTGGAGTTGGCGAAGAACAAGTATCTGAATTCTGGAATCGTGATGAAGAAGCAAGTGGATCGGATGAAGATATATCTGATTCAGATGATGGTGCTGAGATTGTCAACAACCTAACCGGATCAAAGTCCAAATCCAGATTGGGAGTGAATGAAAAAATCGCATTGTTACAACGTGCTGAAGAAAACCACTATCAAAATGAAAATGCTGATAAACAGAGAAACAAGGTTGACAAGAATGCTATATCTGATACAATAAGAGGAGCAACCAGGGAAAGACTGCAAAATTCTCTAAAGCAGGCCCAGCAACGGCTCCAAAACTTGAAGATTGAAGTGGAATCCTCGGCATCTTTACTTGAAGATGAATGCTACAAGAAGTATGGGAAGGTTGGCAAATCATTCTATTATTCACAGGTGGCAAGTACTGTTAGGTGGCTGTCAACTACAAATTCAACCGATCTGATAAGTCGCCTTGGAGGGACTAACGCTTCCTCATCAACGATTGTATTGTCTGAAGCTGAAAATCCCCTTACAACGCCACCTTTGTCAGATCCTTCTGGGAAAGAAGGGGCTGGCAACGGGCCTCATGCCACTGCTTACTTAGAAACCTCCCCACTCGACTTACCGATCGAAAGTTCATCAATAGAGACAAAGTTGCCGCCAATTCCATCATTCTCAGAGTTTGTTAACAGTAGGAACGTAAAAAGTCACCAAACAAGAACCAAACAAGAGCACTCACCAAGAGTGGAGAAGAGGTCAAGGCATAAGTAG 1893 0.4157 MSLKEKGIAAEFLSSTQTADAKNKIYEDLDSAKPSIRLLYVTPELIATLGFMSKLKKIYAKGLLNLIAIDEAHCISTWGHDFRPSYRKLSTLRDQLLDVPMLALTATAAPKVQKDVVKSLNMQNPLILKSSFNRPNIYYEVRYKDLLEDAYTDLSNMLKSKGNVCAIVYCLERSTCDDLAAHLMQNGISCAAYHAGLNNKLRTSVLDNWISSKIQVVVATVAFGMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGVDDRKRMEFILSKSRSNKSQSSSSQEESSERSLADFSQMIEYCEGSGCRRKKILESFGEQVTASLCGKSCDACRHPNLIARCLEDVATARSLHPKNNSSRVFITSSTGGVGEEQVSEFWNRDEEASGSDEDISDSDDGAEIVNNLTGSKSKSRLGVNEKIALLQRAEENHYQNENADKQRNKVDKNAISDTIRGATRERLQNSLKQAQQRLQNLKIEVESSASLLEDECYKKYGKVGKSFYYSQVASTVRWLSTTNSTDLISRLGGTNASSSTIVLSEAENPLTTPPLSDPSGKEGAGNGPHATAYLETSPLDLPIESSSIETKLPPIPSFSEFVNSRNVKSHQTRTKQEHSPRVEKRSRHK 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4860g00014 630 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1 483 - -
Pral4860g00014 630 MobiDBLite consensus disorder prediction 581 610 - -
Pral4860g00014 630 Gene3D - 134 359 IPR027417 -
Pral4860g00014 630 Gene3D - 1 133 IPR027417 -
Pral4860g00014 630 MobiDBLite consensus disorder prediction 280 300 - -
Pral4860g00014 630 Pfam RecQ zinc-binding 271 342 IPR032284 -
Pral4860g00014 630 MobiDBLite consensus disorder prediction 543 630 - -
Pral4860g00014 630 NCBIfam RecQ family ATP-dependent DNA helicase 2 345 IPR004589 GO:0004386|GO:0006310
Pral4860g00014 630 MobiDBLite consensus disorder prediction 388 407 - -
Pral4860g00014 630 Coils Coil 465 492 - -
Pral4860g00014 630 MobiDBLite consensus disorder prediction 281 300 - -
Pral4860g00014 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 355 IPR027417 -
Pral4860g00014 630 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 126 IPR014001 -
Pral4860g00014 630 CDD SF2_C_RecQ 134 267 - -
Pral4860g00014 630 FunFam RecQ family DNA helicase 134 359 - -
Pral4860g00014 630 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 146 298 IPR001650 -
Pral4860g00014 630 CDD DEXHc_RecQ 1 133 - -
Pral4860g00014 630 Pfam Helicase conserved C-terminal domain 154 256 IPR001650 -
Pral4860g00014 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 127 IPR027417 -
Pral4860g00014 630 SMART helicmild6 177 258 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4860g00014 Pral-Chr4860 393103 401260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4860g00014 166 273 Eukaryotic Initiation Factors Gene Family AT3G19760 22.222 4.74e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4860g00014 K10901 - gmx:100819601 902.894