Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4860g00012 ATGGACAAGTGTTCTTTGCCCTTAAAAAACGTAGAAAGTAAGACCCATGATAATAAGAAGAGGGTGTTATCTGGGAAGGAAGCATTGGTGAAGCTTTTAAGATGGCATTTTGGTTATCCTGATTTTAGGGGCAAGCAATTGGAGGCTATTCAAGCTGTACATTCGGGAAGAGATTGTTTTTGCCTTATGCCTACAGGAGGGGGGAAGTCGTTATGTTATCAGATCCCTGCATTGGCTAAAACAGGAATAGTTCTTGTTGTTTGTCCATTAATAGCTTTGATGGAAAACCAAGTGATGTCATTAAAAGAGAAAGGAATTGCTGCAGAATTTCTCTCCTCAACCCAAACAGCCGATGCAAAAAATAAGATTTATGAGGACCTTGATTCTGCAAAGCCTTCTATAAGGCTGCTGTATGTCACTCCAGAATTGATAGCGACGCTGGGTTTTATGTCAAAGCTGAAAAAGATATATGCTAAAGGGTTGTTGAATCTCATTGCCATAGATGAGGCACATTGCATCTCAACTTGGGGCCATGATTTCAGGCCTAGCTATCGTAAGCTTTCAACCTTGAGAGACCAACTTTTGGATGTGCCAATGTTAGCTCTGACTGCTACAGCTGCTCCTAAGGTACAGAAGGATGTGGTAAAATCACTGAACATGCAAAATCCGTTAATACTAAAGTCATCTTTTAATCGTCCTAATATATACTATGAAGTTCGATACAAAGATCTTTTGGAAGATGCTTATACTGATCTGTCCAATATGCTAAAATCTAAGGGAAATGTCTGTGCAATTGTTTACTGCCTTGAGCGTTCAACATGTGATGACCTGGCAGCTCATCTAATGCAAAATGGCATTTCCTGTGCTGCCTATCATGCAGGGTTGAATAATAAATTGCGGACCTCTGTGTTGGATAATTGGATTTCTTCCAAGATACAAGTTGTTGTTGCCACTGTTGCTTTTGGAATGGGCATTGACAGAAAGGATGTCAGAATTGTGTGCCACTTTAATATTCCAAAGTCAATGGAAGCATTCTATCAGGAGTCAGGCAGGGCAGGTCGTGATCAGTTGCCATCTACAAGTTTGTTGTACTATGGAGTAGATGATCGCAAAAGAATGGAATTTATATTGAGTAAATCCCGAAGCAATAAGTCACAGTCATCAAGCTCTCAGGAAGAATCATCCGAAAGGTCCCTAGCTGACTTTAGTCAGATGATTGAATACTGTGAAGGATCTGGATGCCGAAGGAAAAAGATTCTTGAGAGTTTTGGGGAGCAGGTCACTGCATCATTATGTGGAAAATCATGTGATGCCTGCAGACATCCAAACTTAATTGCTAGATGTTTGGAGGACGTAGCAACTGCCCGTTCTTTACACCCAAAAAATAATTCCTCTCGAGTCTTTATCACCAGTTCAACAGGTGGAGTTGGCGAAGAACAAGTATCTGAATTCTGGAATCGTGATGAAGAAGCAAGTGGATCGGATGAAGATATATCTGATTCAGATGATGGTGCTGAGATTGTCAACAACCTAACCGGATCAAAGTCCAAATCCAGATTGGGAGTGAATGAAAAAATCGCATTGTTACAACGTGCTGAAGAAAACCACTATCAAAATGAAAATGCTGATAAACAGAGAAACAAGGTTGACAAGAATGCTATATCTGATACAATAAGAGGAGCAACCAGGGAAAGACTGCAAAATTCTCTAAAGCAGGCCCAGCAACGGCTCCAAAACTTGAAGATTGAAGTGGAATCCTCGGCATCTTTACTTGAAGATGAATGCTACAAGAAGTATGGGAAGGTTGGCAAATCATTCTATTATTCACAGGTGGCAAGTACTGTTAGGTGGCTGTCAACTACAAATTCAACCGATCTGATAAGTCGCCTTGGAGGGACTAACGCTTCCTCATCAACGATTGTATTGTCTGAAGCTGAAAATCCCCTTACAACGCCACCTTTGTCAGATCCTTCTGGGAAAGAAGGGGCTGGCAACGGGCCTCATGCCACTGCTTACTTAGAAACCTCCCCACTCGACTTACCGATCGAAAGTTCATCAATAGAGACAAAGTTGCCGCCAATTCCATCATTCTCAGAGTTTGTTAACAGTAGGAACGTAAAAAGTCACCAAACAAGAACCAAACAAGAGCACTCACCAAGAGTGGAGAAGAGGTCAAGGCATAAGTAG 2187 0.4143 MDKCSLPLKNVESKTHDNKKRVLSGKEALVKLLRWHFGYPDFRGKQLEAIQAVHSGRDCFCLMPTGGGKSLCYQIPALAKTGIVLVVCPLIALMENQVMSLKEKGIAAEFLSSTQTADAKNKIYEDLDSAKPSIRLLYVTPELIATLGFMSKLKKIYAKGLLNLIAIDEAHCISTWGHDFRPSYRKLSTLRDQLLDVPMLALTATAAPKVQKDVVKSLNMQNPLILKSSFNRPNIYYEVRYKDLLEDAYTDLSNMLKSKGNVCAIVYCLERSTCDDLAAHLMQNGISCAAYHAGLNNKLRTSVLDNWISSKIQVVVATVAFGMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGVDDRKRMEFILSKSRSNKSQSSSSQEESSERSLADFSQMIEYCEGSGCRRKKILESFGEQVTASLCGKSCDACRHPNLIARCLEDVATARSLHPKNNSSRVFITSSTGGVGEEQVSEFWNRDEEASGSDEDISDSDDGAEIVNNLTGSKSKSRLGVNEKIALLQRAEENHYQNENADKQRNKVDKNAISDTIRGATRERLQNSLKQAQQRLQNLKIEVESSASLLEDECYKKYGKVGKSFYYSQVASTVRWLSTTNSTDLISRLGGTNASSSTIVLSEAENPLTTPPLSDPSGKEGAGNGPHATAYLETSPLDLPIESSSIETKLPPIPSFSEFVNSRNVKSHQTRTKQEHSPRVEKRSRHK 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4860g00012 728 Coils Coil 563 590 - -
Pral4860g00012 728 FunFam ATP-dependent DNA helicase 23 231 - -
Pral4860g00012 728 MobiDBLite consensus disorder prediction 379 398 - -
Pral4860g00012 728 Pfam RecQ zinc-binding 369 440 IPR032284 -
Pral4860g00012 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 376 IPR027417 -
Pral4860g00012 728 CDD SF2_C_RecQ 232 365 - -
Pral4860g00012 728 MobiDBLite consensus disorder prediction 378 398 - -
Pral4860g00012 728 Gene3D - 232 457 IPR027417 -
Pral4860g00012 728 MobiDBLite consensus disorder prediction 679 708 - -
Pral4860g00012 728 CDD DEXHc_RecQ 31 231 - -
Pral4860g00012 728 MobiDBLite consensus disorder prediction 486 505 - -
Pral4860g00012 728 MobiDBLite consensus disorder prediction 641 728 - -
Pral4860g00012 728 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 244 396 IPR001650 -
Pral4860g00012 728 PANTHER DNA HELICASE RECQ FAMILY MEMBER 24 581 - -
Pral4860g00012 728 SMART ultradead3 38 240 IPR014001 -
Pral4860g00012 728 Pfam DEAD/DEAH box helicase 46 212 IPR011545 GO:0003676|GO:0005524
Pral4860g00012 728 FunFam RecQ family DNA helicase 232 457 - -
Pral4860g00012 728 Pfam Helicase conserved C-terminal domain 252 354 IPR001650 -
Pral4860g00012 728 NCBIfam RecQ family ATP-dependent DNA helicase 32 443 IPR004589 GO:0004386|GO:0006310
Pral4860g00012 728 Gene3D - 4 231 IPR027417 -
Pral4860g00012 728 SMART helicmild6 275 356 IPR001650 -
Pral4860g00012 728 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 224 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4860g00012 Pral-Chr4860 392208 401260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4860g00012 35 371 Eukaryotic Initiation Factors Gene Family AT3G19760 20.222 1.24e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4860g00012 K10901 - gmx:100819601 1045.03