Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral485g00003 ATGGGGAGGGGGAAGATAGAGATAAAGAGGATAGAGAACACAACGAATCGACAGGTGACATTCTGCAAAAGAAGGAATGGGCTTTTGAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAAGTTTCCCTCATCGTCTTCTCCAATCGTGGTCGTCTCTATGAGTACTCCAACAACAACATTAGGTCAACTATTGAGAGGTATAAAAAGGCATGTTCAGATCATTCAAGTACCAGCTCTCCCACTGAAATCAATGCCCAGTATTATCAACAAGAATCTGCAAAGCTACGACAACAGATTCAGATGCTGCAAAGTTCTAACAGGCATTTGATGGGTGATGCCTTGAGCAATCTGAATGTGAAGGAGCTGAAGCAGCTGGAGAATAGACTTGAACGAGGCCTCTCTAGAATCAGATCCAAAAAGCACGAGATGCTGCTGGCAGAAATCGAATACATGCAGAAGAAGGAAATTGAGCTTGAAAATGAAAACCTTTGTATTCGAACCAAGGTACAAATCTATGTAATTTATTATTCGTTATTTATTTTATTGAAATATGAGAATGAATATATAAATGAGCAGATAGCAGAAGTGGAGAGGGCAGAAGAAGAAGCGATGGCAACAGGAGGGCAGGATCTGAGTGCCATTCAGGCTTTGGCTTCTCGAAATTACTTCATTCACGCTCTTCATCCTTCTCCTTCTCACAACAAGAATCTAAGCCTTGGGTAA 729 0.4129 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSNRGRLYEYSNNNIRSTIERYKKACSDHSSTSSPTEINAQYYQQESAKLRQQIQMLQSSNRHLMGDALSNLNVKELKQLENRLERGLSRIRSKKHEMLLAEIEYMQKKEIELENENLCIRTKVQIYVIYYSLFILLKYENEYINEQIAEVERAEEEAMATGGQDLSAIQALASRNYFIHALHPSPSHNKNLSLG 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral485g00003 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Pral485g00003 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral485g00003 242 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pral485g00003 242 Coils Coil 121 144 - -
Pral485g00003 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral485g00003 242 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral485g00003 242 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Pral485g00003 242 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Pral485g00003 242 Coils Coil 184 204 - -
Pral485g00003 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral485g00003 242 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral485g00003 242 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
Pral485g00003 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral485g00003 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral485g00003 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral485g00003 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral485g00003 Pral-Chr485 11669 25282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral485g00003 1 229 MADS-box Gene Family AT4G09960 68.261 2.11e-106 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral485g00003 K-box 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral485g00003 K09264 - gmx:100301905 327.405