Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4858g00003 ATGCTCAAATCCATGTCTTTTTTGGCGCATTTAAGTCTTACAAACAGACATTTTTCGCCAAAATTTTATTGTTCATCTTGTTATAAATCTGTCAACGAGCTTTTCTTTTCTCATACTATAAAAGAGGGGGAAATGATAGACTCAGAGGTGGACCCGCCATCGACAACGGCGACACCGGCGCCACTGTTCTCGTCGGGAAGGGTGGATTCACTGTCATCCACTCAGAATTCGATGCCCTTAAAGTGTGAGTGTATACCAACAATCAGGACTCATTCCAGCTTCTCCATTCGCAACGCCTCTCTCTCACGCAAGACAGGAGCAGAGTTTTTGGGCACCTTCATATTGATGTTTGCAGCATCGGCAGGACCCATATTGAACCAGAAATACAACGGCGTTGAGGGCCTCATCGGAAACGCTGCTTGCTCCGGCTTAGCCGTCACAATCGTGGTCTTGTCCATTGGCCACATCTCCGGCGCTCACCTCAACCCCTCCGTCACCATCGCCTTCGCCGCCTTCCGCCACTTCCCCTGGGTCCACGTCCCCGCCTACATCCTCGCTCAGGTCGCCGCCTCCATCTGCGCCTCATTCACCGTCAAGGGCATCTTCCATCCGCTGGTGAACGGAGAAGTGACCGTCCCTTCCGTGAGTACGAGTCTTGGACAGGCTTTTGTGCTGGAGTCCATCATCACTTTCAATCTTATGTTCGTTATCACTGCCGTCGCTACTGATACTCGCGCTGTTGGAGAAATGGCTGGGATTGCTATTGGAACCACAGTTTTGCTCAACATTCTCATTTCTGGGCCGGCAAGTGGGGGATCAATGAACCCGGTGAGGACGTTGGGGGCAGCGGTGGCGGTGGGAAATTACAAGGACTTATGGCTATACTTCATTGCGCCCACCATCGGAGCTCTGGCCGGCGCCGGTGCTTATACTATGATCAAGCTCCGGGACGACGACCCCAACCCACAACATCAAGTTTGA 981 0.5219 MLKSMSFLAHLSLTNRHFSPKFYCSSCYKSVNELFFSHTIKEGEMIDSEVDPPSTTATPAPLFSSGRVDSLSSTQNSMPLKCECIPTIRTHSSFSIRNASLSRKTGAEFLGTFILMFAASAGPILNQKYNGVEGLIGNAACSGLAVTIVVLSIGHISGAHLNPSVTIAFAAFRHFPWVHVPAYILAQVAASICASFTVKGIFHPLVNGEVTVPSVSTSLGQAFVLESIITFNLMFVITAVATDTRAVGEMAGIAIGTTVLLNILISGPASGGSMNPVRTLGAAVAVGNYKDLWLYFIAPTIGALAGAGAYTMIKLRDDDPNPQHQV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4858g00003 326 PRINTS Major intrinsic protein family signature 256 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4858g00003 326 PRINTS Major intrinsic protein family signature 103 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4858g00003 326 PRINTS Major intrinsic protein family signature 142 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4858g00003 326 PRINTS Major intrinsic protein family signature 179 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4858g00003 326 PRINTS Major intrinsic protein family signature 293 313 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4858g00003 326 PRINTS Major intrinsic protein family signature 225 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4858g00003 326 CDD MIP 103 313 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4858g00003 326 SUPERFAMILY Aquaporin-like 99 320 IPR023271 -
Pral4858g00003 326 ProSitePatterns MIP family signature. 160 168 IPR022357 -
Pral4858g00003 326 Pfam Major intrinsic protein 97 310 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pral4858g00003 326 Gene3D Glycerol uptake facilitator protein. 73 325 IPR023271 -
Pral4858g00003 326 PANTHER AQUAPORIN NIP2-1 89 317 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4858g00003 Pral-Chr4858 23645 26386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4858g00003 62 326 Major Intrinsic Protein MIP AT4G10380 63.004 1.23e-121 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4858g00003 K09874 - csav:115710810 382.874