Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4853g00003 ATGGCAGAAACTCATCTTCATGGGACACTCCACGCCACCATTCATGAGGTGGATAAGCTAAATGCTGGTGAAGATAATCTTATATTAAAAATAGAAGGACAAAAAATCGAGGACACGGTTGGTGTAGGGAAGGGATCATCCCAAATGTACGCAACCATTGATCTGGAGAAAGCAAGAGTGGGAAGAACCAGGGTTTTGGAAAACACAGATTCCAGTCTCAGATGGCAAGAATCTTTCCACATATACTGTGCCCACGTCGCATCCAACGTCATCTTCACCGTCAAAGGCGTCAACAAGATCGGCGCCACCTTAATCGGACGAGCCTACGTCCCCGTCGACAACATCATCGGCGGTGACACCTACGATGAATGGCTCGATATCTTAAACGAAGAAAAAGAACCCATCGGCTCCAAAATCCACGTCAAGCTCCAATACTTCGACGTCACAAAAGACAGAAACTGGAATCGAGGCATTCGGAGCCCTAAATACCCAGGAGTACCCTACACTTTCTTCTCACAAAGACAAGGTTGTAAGGTTACCTTGTACCATGACGCTCATGTCCCTGAAGATTTCATTCCCAGAATCCCCCTCTCAGAAGACAAGTATTATGAACCTCATCGATGTTGGGAAGATGTTTTCGACGCAATTAGAAATGCAAAGCACTTTATATACATCACTGGTTGGTCTGTTTACACTGAGATTAAACTAGTGAGAGATGCTAAGAGGCCAAAAGATGGAGGTCACATGACACTAGGACAGCTTCTGAAAGATAAAGCAAATGAAGGGGTTAAGGTTTTGATGCTTGTTTGGGACGATAGAACTTCTGTTAGTCTGTTAAAAAAGGACGGGTTAATGGCAACACATGATGAAGAAACTGAGAAATTCTTTCAAGATACTCCAGTTCACTGTGTTTTATGCCCTCGTGATCCCGACGAAGGTGCCGGGAGTATAATACAGGACGTACAGATTTCCACCATGTTCACTCATCACCAGAAGATCGTGGTGGTGGACGGTGAGCTTCCGGGACGAGGGTCGTCCAGCAAGAGAAGAATAGCGAGTTTCGTCGGTGGGCTTGATTTATGCGACGGAAGATACGACACTGCGTTTCATTCACTTTTCAGAACGTTGGACACTGCTCATCACGATGACTTTCATCAACCTAACTTCGCCGGCGCCGACATCAACAAAGGTGGACCCCGGGAGCCGTGGCACGATATACATTCGCGTCTGGAAGGACCCGTTGCTTGGGATGTTTTGTTTAATTTTGAACAGAGATGGAAGAAGCAAGGAGGGAAGGATGTGCTCGTCTCCCATGGAGAGCTCGAGGAGATAGTTATTCCGCCATCTCCGGTGATGTTCCCGGAGGATCACGAGACGTGGAATGTTCAGTTGTTCCGATCCATCGACGGCGGCGCTGCCTTTGGCTTCCCAGATAGCCCAGAAGAAGCAGCCGACGCCGGGCTCGTGAGTGGGAAAAAAAACATCGTAGACAGAAGCATTCAAGATGCATATATCCATGCAATAAGACGAGCGAGGAAGTTCATATACATAGAGAATCAGTATTTTCTGGGAAGCTCATATGCGTGGAGCGCTGAAGATGGCGACATAAAGCCGGAAGAAATTAACGCACTTCACGTCATACCCAAAGAACTATCACTGAAAATCGTAAGCAAGATCGAAGCAGGAGAGAGATTCACGGTGTACGTGGTGATTCCGATGTGGCCGGAGGGCATACCAGACAGCGGCTCCGTGCAGGCAATATTAGATTGGCAGAGAAGAACGATGGACACAATGTATAAAGACATTGTCGAAGCTTTGGAGGCAAAGGGAATAAGGGAAGATCCTCGCAAGTACTTAACATTCTTCTGTCTGGGAAACAGAGAAGTGAAACGAGACGGCGAGTATGAACCACCGGAACAACCAGAACCTGATACCCCTTATGAAAAAGCCCAGAAAGCTCGTCGCTTCATGATTTATGTTCACACCAAGATGATGATAGTGGATGATGAGTACATAATCGTGGGATCTGCGAACATAAACCAGAGGTCAATGGATGGATCAAGGGACACAGAGATAGCGATGGGGGCATATCAGCCGTATCATTTGGCGACGAGCAGGGGGCCGGCGAGGGGACAGATCCATGGATTCCGAATGGCGTTGTGGTATGAGCATCTTGGGGTGATGGAGGAGTGTTTCAATCACCCAGAAAGTGAAGAATGTGTGGAGAAGGTGAACCAGATGGCTGATAAGTACTGGGAATTGTACTCAGATGAATCATTTGAAGAAGATCTTCCAGGGCATTTGCTGCGATATCCTGTGAAGATTTCTAGGGAAGGGCGAGTTCAAGAACTGCAAGGCTTTGAGTTCTTCCCTGATACACAGGCTCGTATTCTTGGTGCCAAGTCAGACTACATGCCACCAATCCTCACTACTTAA 2436 0.4717 MAETHLHGTLHATIHEVDKLNAGEDNLILKIEGQKIEDTVGVGKGSSQMYATIDLEKARVGRTRVLENTDSSLRWQESFHIYCAHVASNVIFTVKGVNKIGATLIGRAYVPVDNIIGGDTYDEWLDILNEEKEPIGSKIHVKLQYFDVTKDRNWNRGIRSPKYPGVPYTFFSQRQGCKVTLYHDAHVPEDFIPRIPLSEDKYYEPHRCWEDVFDAIRNAKHFIYITGWSVYTEIKLVRDAKRPKDGGHMTLGQLLKDKANEGVKVLMLVWDDRTSVSLLKKDGLMATHDEETEKFFQDTPVHCVLCPRDPDEGAGSIIQDVQISTMFTHHQKIVVVDGELPGRGSSSKRRIASFVGGLDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFAGADINKGGPREPWHDIHSRLEGPVAWDVLFNFEQRWKKQGGKDVLVSHGELEEIVIPPSPVMFPEDHETWNVQLFRSIDGGAAFGFPDSPEEAADAGLVSGKKNIVDRSIQDAYIHAIRRARKFIYIENQYFLGSSYAWSAEDGDIKPEEINALHVIPKELSLKIVSKIEAGERFTVYVVIPMWPEGIPDSGSVQAILDWQRRTMDTMYKDIVEALEAKGIREDPRKYLTFFCLGNREVKRDGEYEPPEQPEPDTPYEKAQKARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGSRDTEIAMGAYQPYHLATSRGPARGQIHGFRMALWYEHLGVMEECFNHPESEECVEKVNQMADKYWELYSDESFEEDLPGHLLRYPVKISREGRVQELQGFEFFPDTQARILGAKSDYMPPILTT 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4853g00003 811 SUPERFAMILY Phospholipase D/nuclease 149 436 - -
Pral4853g00003 811 Pfam C2 domain 9 126 IPR000008 -
Pral4853g00003 811 Gene3D C2 domain 6 157 IPR035892 -
Pral4853g00003 811 CDD C2_plant_PLD 2 146 - -
Pral4853g00003 811 Gene3D Endonuclease Chain A 196 443 - -
Pral4853g00003 811 PANTHER PHOSPHOLIPASE D 6 799 IPR015679 -
Pral4853g00003 811 Pfam Phospholipase D C terminal 729 801 IPR024632 -
Pral4853g00003 811 Gene3D Endonuclease Chain A 473 700 - -
Pral4853g00003 811 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Pral4853g00003 811 FunFam Phospholipase D delta 199 444 - -
Pral4853g00003 811 PIRSF PLD_plant 1 811 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Pral4853g00003 811 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 364 IPR001736 GO:0003824
Pral4853g00003 811 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 148 IPR035892 -
Pral4853g00003 811 SMART pld_4 656 683 IPR001736 GO:0003824
Pral4853g00003 811 SMART pld_4 325 364 IPR001736 GO:0003824
Pral4853g00003 811 SMART C2_3c 9 124 IPR000008 -
Pral4853g00003 811 Pfam Phospholipase D Active site motif 657 683 IPR001736 GO:0003824
Pral4853g00003 811 Pfam Phospholipase D Active site motif 325 364 IPR001736 GO:0003824
Pral4853g00003 811 FunFam Phospholipase D 467 702 - -
Pral4853g00003 811 SUPERFAMILY Phospholipase D/nuclease 500 741 - -
Pral4853g00003 811 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 656 683 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4853g00003 Pral-Chr4853 9609 13198 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4853g00003 1 811 Phospholipase D Gene Family (Wang group) AT3G15730 73.620 0.0 1283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4853g00003 K01115 - gmx:100786410 1340.48