Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4853g00002 ATGGCAGAAACTCATCTTCATGGGACACTCCACGCCACCATTCATGAGGTGGATAAGCTAAATGCTGGTGAAGATAGCAGTATTTTCGGCATGGACACGGTTGGTGTAGGGAAGGGATCATCCCAAATGTACGCAACCATTGATCTGGAGAAAGCAAGAGTGGGAAGAACCAGGGTTTTGGAAAACACAGATTCCAGTCTCAGATGGCAAGAATCTTTCCACATATACTGTGCCCACGTCGCATCCAACGTCATCTTCACCGTCAAAGGCGTCAACAAGATCGGCGCCACCTTAATCGGACGAGCCTACGTCCCCGTCGACAACATCATCGGCGGTGACACCTACGATGAATGGCTCGATATCTTAAACGAAGAAAAAGAACCCATCGGCTCCAAAATCCACGTCAAGCTCCAATACTTCGACGTCACAAAAGACAGAAACTGGAATCGAGGCATTCGGAGCCCTAAATACCCAGGAGTACCCTACACTTTCTTCTCACAAAGACAAGGTTGTAAGGTTACCTTGTACCATGACGCTCATGTCCCTGAAGATTTCATTCCCAGAATCCCCCTCTCAGAAGACAAGTATTATGAACCTCATCGATGTTGGGAAGATGTTTTCGACGCAATTAGAAATGCAAAGCACTTTATATACATCACTGGTTGGTCTGTTTACACTGAGATTAAACTAGTGAGAGATGCTAAGAGGCCAAAAGATGGAGGTCACATGACACTAGGACAGCTTCTGAAAGATAAAGCAAATGAAGGGGTTAAGGTTTTGATGCTTGTTTGGGACGATAGAACTTCTGTTAGTCTGTTAAAAAAGGACGGGTTAATGGCAACACATGATGAAGAAACTGAGAAATTCTTTCAAGATACTCCAGTTCACTGTGTTTTATGCCCTCGTGATCCCGACGAAGGTGCCGGGAGTATAATACAGGACGTACAGATTTCCACCATGTTCACTCATCACCAGAAGATCGTGGTGGTGGACGGTGAGCTTCCGGGACGAGGGTCGTCCAGCAAGAGAAGAATAGCGAGTTTCGTCGGTGGGCTTGATTTATGCGACGGAAGATACGACACTGCGTTTCATTCACTTTTCAGAACGTTGGACACTGCTCATCACGATGACTTTCATCAACCTAACTTCGCCGGCGCCGACATCAACAAAGGTGGACCCCGGGAGCCGTGGCACGATATACATTCGCGTCTGGAAGGACCCGTTGCTTGGGATGTTTTGTTTAATTTTGAACAGAGATGGAAGAAGCAAGGAGGGAAGGATGTGCTCGTCTCCCATGGAGAGCTCGAGGAGATAGTTATTCCGCCATCTCCGGTGATGTTCCCGGAGGATCACGAGACGTGGAATGTTCAGTTGTTCCGATCCATCGACGGCGGCGCTGCCTTTGGCTTCCCAGATAGCCCAGAAGAAGCAGCCGACGCCGGGCTCGTGAGTGGGAAAAAAAACATCGTAGACAGAAGCATTCAAGATGCATATATCCATGCAATAAGACGAGCGAGGAAGTTCATATACATAGAGAATCAGTATTTTCTGGGAAGCTCATATGCGTGGAGCGCTGAAGATGGCGACATAAAGCCGGAAGAAATTAACGCACTTCACGTCATACCCAAAGAACTATCACTGAAAATCGTAAGCAAGATCGAAGCAGGAGAGAGATTCACGGTGTACGTGGTGATTCCGATGTGGCCGGAGGGCATACCAGACAGCGGCTCCGTGCAGGCAATATTAGATTGGCAGAGAAGAACGATGGACACAATGTATAAAGACATTGTCGAAGCTTTGGAGGCAAAGGGAATAAGGGAAGATCCTCGCAAGTACTTAACATTCTTCTGTCTGGGAAACAGAGAAGTGAAACGAGACGGCGAGTATGAACCACCGGAACAACCAGAACCTGATACCCCTTATGAAAAAGCCCAGAAAGCTCGTCGCTTCATGATTTATGTTCACACCAAGATGATGATAGTGGATGATGAGTACATAATCGTGGGATCTGCGAACATAAACCAGAGGTCAATGGATGGATCAAGGGACACAGAGATAGCGATGGGGGCATATCAGCCGTATCATTTGGCGACGAGCAGGGGGCCGGCGAGGGGACAGATCCATGGATTCCGAATGGCGTTGTGGTATGAGCATCTTGGGGTGATGGAGGAGTGTTTCAATCACCCAGAAAGTGAAGAATGTGTGGAGAAGGTGAACCAGATGGCTGATAAGTACTGGGAATTGTACTCAGATGAATCATTTGAAGAAGATCTTCCAGGGCATTTGCTGCGATATCCTGTGAAGATTTCTAGGGAAGGGCGAGTTCAAGAACTGCAAGGCTTTGAGTTCTTCCCTGATACACAGGCTCGTATTCTTGGTGCCAAGTCAGACTACATGCCACCAATCCTCACTACTTAA 2418 0.4752 MAETHLHGTLHATIHEVDKLNAGEDSSIFGMDTVGVGKGSSQMYATIDLEKARVGRTRVLENTDSSLRWQESFHIYCAHVASNVIFTVKGVNKIGATLIGRAYVPVDNIIGGDTYDEWLDILNEEKEPIGSKIHVKLQYFDVTKDRNWNRGIRSPKYPGVPYTFFSQRQGCKVTLYHDAHVPEDFIPRIPLSEDKYYEPHRCWEDVFDAIRNAKHFIYITGWSVYTEIKLVRDAKRPKDGGHMTLGQLLKDKANEGVKVLMLVWDDRTSVSLLKKDGLMATHDEETEKFFQDTPVHCVLCPRDPDEGAGSIIQDVQISTMFTHHQKIVVVDGELPGRGSSSKRRIASFVGGLDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFAGADINKGGPREPWHDIHSRLEGPVAWDVLFNFEQRWKKQGGKDVLVSHGELEEIVIPPSPVMFPEDHETWNVQLFRSIDGGAAFGFPDSPEEAADAGLVSGKKNIVDRSIQDAYIHAIRRARKFIYIENQYFLGSSYAWSAEDGDIKPEEINALHVIPKELSLKIVSKIEAGERFTVYVVIPMWPEGIPDSGSVQAILDWQRRTMDTMYKDIVEALEAKGIREDPRKYLTFFCLGNREVKRDGEYEPPEQPEPDTPYEKAQKARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGSRDTEIAMGAYQPYHLATSRGPARGQIHGFRMALWYEHLGVMEECFNHPESEECVEKVNQMADKYWELYSDESFEEDLPGHLLRYPVKISREGRVQELQGFEFFPDTQARILGAKSDYMPPILTT 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4853g00002 805 Gene3D Endonuclease Chain A 467 694 - -
Pral4853g00002 805 SUPERFAMILY Phospholipase D/nuclease 143 430 - -
Pral4853g00002 805 Gene3D Endonuclease Chain A 190 437 - -
Pral4853g00002 805 PIRSF PLD_plant 1 805 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Pral4853g00002 805 Pfam C2 domain 8 120 IPR000008 -
Pral4853g00002 805 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 142 IPR035892 -
Pral4853g00002 805 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 319 358 IPR001736 GO:0003824
Pral4853g00002 805 SMART pld_4 319 358 IPR001736 GO:0003824
Pral4853g00002 805 SMART pld_4 650 677 IPR001736 GO:0003824
Pral4853g00002 805 SMART C2_3c 9 118 IPR000008 -
Pral4853g00002 805 Pfam Phospholipase D Active site motif 319 358 IPR001736 GO:0003824
Pral4853g00002 805 Pfam Phospholipase D Active site motif 651 677 IPR001736 GO:0003824
Pral4853g00002 805 CDD C2_plant_PLD 2 140 - -
Pral4853g00002 805 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 650 677 IPR001736 GO:0003824
Pral4853g00002 805 Gene3D C2 domain 5 151 IPR035892 -
Pral4853g00002 805 ProSiteProfiles C2 domain profile. 1 119 IPR000008 -
Pral4853g00002 805 PANTHER PHOSPHOLIPASE D 6 793 IPR015679 -
Pral4853g00002 805 FunFam Phospholipase D 461 696 - -
Pral4853g00002 805 Pfam Phospholipase D C terminal 723 795 IPR024632 -
Pral4853g00002 805 FunFam Phospholipase D delta 193 438 - -
Pral4853g00002 805 SUPERFAMILY Phospholipase D/nuclease 494 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4853g00002 Pral-Chr4853 9609 13198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4853g00002 1 805 Phospholipase D Gene Family (Wang group) AT1G52570 75.092 0.0 1279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4853g00002 K01115 - gmx:100786410 1334.32