Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4850g00003 ATGTCTTCCTCCTCTCGTCCCCCGGACCAGATCATTCACTCCATGAAACGACAACTCCCATTCTCGTCTATGAAGCCTTCCTTTGTTGCTTCCGCAGATTATCATCGCTTCGCGCCCGACAAACGCCGACCTGCTGACCAAGAAGCCGAAACCATCGTCGTCAAGTCACCTCAATTGAAGCGAAAGATTACTACAGCCAATTCTGAAGCTGATTCCGTTGATAGGATGAACCGAGGATCTAATGAAGCAGCTAATAGCCCTTTTCAGACTCCGATGTCAGGAAAAATGGGGAAGGCAAGCAAAGCATCAAAGCTTCCAAAATGCAGCAAAGCTGGACCTCAAACCCCAGGATCAAATGTTGGTTCTCCTTCTGGCAACAATCTTACTCCAGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAAAAGTTCATCAACTTGATCAAGCAAGCCGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGATACATTAGAGGTGCAAAAGAGGAGAATATATGATATAACAAACGTTCTTGAAGGGATTGGTCTTATAGAAAAGAAGCTCAAAAACAGAATTCAATGGAAGGGATTGGATGTGTCAAGGCCAGGGGAGGCTGATGATAGTTTTTCTAGTTTGCAGACAGAGGTTGAAAACCTTACTATGAAGGAGGGCCAGTTAGATGAGCAAATAAGGGAGATGCAAGAAAGACTGAGGAAACTTAGTGAAGATGAAAACAATCAGAAGTGGCTTTTTCTCACGGAAGATGATATAAAGGGTTTGCCCTGCTTCCTGAATGAAACCTTAATAGCCATTAAAGCTCCCCATGGCACCACTCTTGAGGTCCCTGATCCAGATGAGGCTGTTGATTATCCCCAAAGGAGATACAGGATAATCCTCAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAGGAAAAATTTGAGGAGATCAATGGAGTCGATGTACCACCCAATCTTCCATCCAGTCCAGAGTTGAACAGGCATCCGGCAACAGTGATCACTGAGGATGCAAGGAATGACAAAGAAATGCAGGAACAAGACGGTCATAGACCTGGTTCTGATTTGAGTGCCTCACAGGACTTCGTTAGTGGGATCATGAAGATTGTTCCGTCAGATGTTGATAGTGATGCTGATTATTGGCTTCTATCAAATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAATCTGGAATTGAATGGAACGAACTGGACGCACTTAATGAAGATTATTGCATGCCTCAGGAGAGCGCAGCACGACCTGAGACGCCTCCAAACATGAGTCAACTGCCTTCGACGGCTAACCCTGAAGGAGGCTGA 1365 0.4476 MSSSSRPPDQIIHSMKRQLPFSSMKPSFVASADYHRFAPDKRRPADQEAETIVVKSPQLKRKITTANSEADSVDRMNRGSNEAANSPFQTPMSGKMGKASKASKLPKCSKAGPQTPGSNVGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFSSLQTEVENLTMKEGQLDEQIREMQERLRKLSEDENNQKWLFLTEDDIKGLPCFLNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEINGVDVPPNLPSSPELNRHPATVITEDARNDKEMQEQDGHRPGSDLSASQDFVSGIMKIVPSDVDSDADYWLLSNADVSITDMWRTESGIEWNELDALNEDYCMPQESAARPETPPNMSQLPSTANPEGG 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4850g00003 454 MobiDBLite consensus disorder prediction 112 130 - -
Pral4850g00003 454 SUPERFAMILY "Winged helix" DNA-binding domain 135 198 IPR036390 -
Pral4850g00003 454 MobiDBLite consensus disorder prediction 346 364 - -
Pral4850g00003 454 MobiDBLite consensus disorder prediction 429 454 - -
Pral4850g00003 454 SMART E2F_TDP_2 135 200 IPR003316 GO:0005667|GO:0006355
Pral4850g00003 454 MobiDBLite consensus disorder prediction 39 130 - -
Pral4850g00003 454 Gene3D - 207 317 - -
Pral4850g00003 454 SUPERFAMILY E2F-DP heterodimerization region 213 317 IPR037241 -
Pral4850g00003 454 Coils Coil 220 250 - -
Pral4850g00003 454 MobiDBLite consensus disorder prediction 1 21 - -
Pral4850g00003 454 FunFam E2F transcription factor 1 129 202 - -
Pral4850g00003 454 CDD E2F_DD 211 317 IPR032198 GO:0046983
Pral4850g00003 454 Coils Coil 151 171 - -
Pral4850g00003 454 MobiDBLite consensus disorder prediction 436 454 - -
Pral4850g00003 454 Pfam E2F transcription factor CC-MB domain 216 316 IPR032198 GO:0046983
Pral4850g00003 454 MobiDBLite consensus disorder prediction 329 372 - -
Pral4850g00003 454 Gene3D - 129 202 IPR036388 -
Pral4850g00003 454 PANTHER TRANSCRIPTION FACTOR E2F 71 414 IPR015633 GO:0000978|GO:0006357
Pral4850g00003 454 Pfam E2F/DP family winged-helix DNA-binding domain 137 200 IPR003316 GO:0005667|GO:0006355
Pral4850g00003 454 MobiDBLite consensus disorder prediction 58 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4850g00003 Pral-Chr4850 7722 12780 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4850g00003 14 453 E2F-DP Transcription Factor Family AT5G22220 56.503 5.94e-160 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pral4850g00003 E2F_CC-MB 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4850g00003 K06620 - gmx:100819817 696.041