Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral484g00011 ATGGCTTCGGATCTCAACAGAGCTGGTCCCGTGGAAAGAGACATTGAGCAGGCCATTACTGCATTGAAAAAAGGGGCTTGCTTGCTCAAGTATGGAAGAAGGGGGAAGCCCAAGTTTTGTCAGATTCGGCTTTCCAATGATGAATCTTCTTTGATATGGTTCTCAGGGAAAGAGGAGAAGCACCTCAAACTAAGCCATATTTCGAGAATAATATCTGGACAACGTACGCCAATCTTTCAAAGATATCCGCGGCCTGAGAAAGAATACCAGTCATTTTCTCTTATCTACAGTGATAGGTCACTGGACTTGATTTGCAAAGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGTTTAAAAGCATTAATATCACGTTGCCATCACCAGAAGTGGAGAACAGAGTCAAGAAGTGATGGCTTTCCATCTGGGGCCAGTAGTCCCAGAACATACACTAGAAGAAGTTCCCCGTTAAATTCTCCATTTGATACTAATGAAAGCCTGCAAAAGGACAGTGGGGATCACCTTCGCCTTCATAGTCCCTTTGAGAGCCCCCCTAAAAATGGTTTGGACAAAGCTTTATCTGATGTGATATTGTATTCTGGTCCTCCAAAGGGTTTGTTCCATCCAGATTCTACTAGTGGTTCAGTCCTCTCAGTGTCATCAGGAGGATCAGATGGTATACATGGTCAGATGAAAGCAATGGGCATGGATGCTTTTAGAGTAAGTCTATCAAGCGCTGTCAGCTCATCCAGCCAGGGTTCTGGTCATGATGATGGTGACGCCTTAGGGGATGTTTTCATTTGGGGGGAAGGAACTGGTGATGGTGTTTTGGGTGGTGGAACTCACCATCTTGGTGGAAAAATGGATTCTCTACTGCCCAAGGCCTTGGAATCTGCAGTGGTACTTGATGTACACAACATAGCTTGTGGTGGCCGGCATGCTGCCTTGGTGACCAAGCAAGGAGAAATTTTCTCTTGGGGAGAGGAATTAGGAGGCAGGCTTGGGCATGGAGTTGACTCTGATGTTCTTCATCCAAAGCTTATAGAATCTCTGAGTAATACCAATATTGAGCTTGTAGCTTGCGGGGAGTACCATACATGTGCTGTGACTCTTTCTGGTGATCTTTATACATGGGGTGATGGCACCTACAATTATGGTCTTCTGGGGCATGGAAATCAAGTGAGCCACTGGGTCCCCAAAAGAGTAAATGGGCCCTTGGAGGGCATACATGTTTCATCTATCTCTTGTGGTCCATGGCACACTGCAGTTGTTACCTCTGCTGGGCAATTATTTACTTTCGGTGATGGTACATTTGGTGTCCTGGGTCATGGGGACAGAAAAAGTGTTAGCATACCAAGAGAAGTAGAGTCCCTTAAGGGTCTTCGTACTGTGAGAACTGCTTGTGGTGTTTGGCATTCTGCTGCAGTTGTAGAAGTCATGGTCGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGTGACAAAGGTCGACTTGGGCATGGTGACAAGGAAGCAAAACTTGTTCCTACCTGTGTTGCAGCTCTTGTTGAACCTAACTTTTGTCAGGTGGTGTGCGGACACAGTCTTACTGTTGCACTTACTACCTCAGGTCATGTCTATACCATGGGTAGTCCTGTCTATGGCCAGCTAGGAAATCTTCATACTGACGGCAAGTTACCAAGACGTGTTGAAGGAAGGCTCTCAAAGAATTTTGTGGAAGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTCTACACATGGGGCAAGGGTGCACATGGTCGTTTAGGACATGGGGATATAGAGGATAGAAATACCCCAACATTAGTGGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGCGGTACTAATTTCACTGCTGCTATCTGTCTTCATAAGTGGGCCTCTGGTGTTGACCAATCCATGTGTTCTGGCTGCCGCCTGCCTTTCAATTTCAAAAGAAAACGTCATAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCTTGCAGCAGTAAGAAATCTCTCAAGGCTTCAATGGCACCAAATCCCAACAAACCTTATCGGGTCTGTGATAATTGTTATAATAAACTAAGGAAAACTATTGAAACTGGTGCTTCATCTCATTCTTCTGTAAGCAGAAGAGGAAGTATCAATCAGGGGCCACTTGATTTTAATGTTAATGATGATAAATTTGATTCAAGATCTCGTAATCAGCTTGCTAGGTTTTCTTCAATGCAATCCTTGAAGCAAGTGGAAAGCAGGTCTTCAAAGAAAAACAAGAAATTTGAATTCAATAGTAGTCGCGTCTCACCCATTCCAAATGGAGGTTCCCATGGTGGGCCGTCGAATGTTTCTAAATCTGTCAATCCTGTTTTTGGATCATCAAAGAAGTTTTTCTCAGCCTCTGTTCCAGGATCTAGAATTGTTTCTCGGGCAACATCCCCAATATCTAGACATCACAGTCCACCTCGTTCAACGACTCCAACCCCAACACTTGGAGGACTTACCTCCCCCAAGATAGGTGTGGATGATGTTAAGAAGACACACGATAGCCTTAACCAAGAGATTACTAAACTAAGAGCGCAGGTGGAAAATATGACTCGCAAAACTCAACTTCAAGAAGTTGAATTGGAAAGAGCGACTAAACAGCTGAAGGAAGCAATAGCATACGCTGGTGAAGAAACTGCCAAATGCAAAGCAGCGAAGGAAGTGATCAAGTCGCTTACTAACCAGCTGAAGGATGTGGCCGAGAAGCTTCCCGCTGGAGCATCTAGGAATGTGAAATTTCCTTCTATTGCTTCCTTTGAATCAAATCCTTGTTCTAATGAAGTCATCAATTCTTCTATTGATGGGTTAAATATTCAAGCTACTAGCCTAGAACCAGACTTAGCGGTATTGAACACCCAGTCACTTTCAAACGGATTAAGTACCACCAGTAATCGAAATGCAGGTAACAACAAACACAGCCAGTCAGATGCAACGATAAGAAATGGGAGCAGAACAAAGGAAGGTGAGACTCGGGGTGAGGTTGGATGGGTTGAGCAAGATGAGCCTGGAGTATATATTACATTTACCTCCCTTGGAGGTGTGATAGATCTTAAGAGAGTTCGTTTCAGTCGAAAGCGGTTTAGTGAGAAGCAAGCAGAACAATGGTGGGCCGAGAATCGGGCCAGAATATATGAGAAGTACAATGTACGCGGGGCTGACAAGTCAGCCATTGATGAAACGATCTACAAATGA 3285 0.4411 MASDLNRAGPVERDIEQAITALKKGACLLKYGRRGKPKFCQIRLSNDESSLIWFSGKEEKHLKLSHISRIISGQRTPIFQRYPRPEKEYQSFSLIYSDRSLDLICKDKDEAEVWFSGLKALISRCHHQKWRTESRSDGFPSGASSPRTYTRRSSPLNSPFDTNESLQKDSGDHLRLHSPFESPPKNGLDKALSDVILYSGPPKGLFHPDSTSGSVLSVSSGGSDGIHGQMKAMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGTHHLGGKMDSLLPKALESAVVLDVHNIACGGRHAALVTKQGEIFSWGEELGGRLGHGVDSDVLHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRTACGVWHSAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVVCGHSLTVALTTSGHVYTMGSPVYGQLGNLHTDGKLPRRVEGRLSKNFVEEIACGAYHVAVLTSRTEVYTWGKGAHGRLGHGDIEDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWASGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCYNKLRKTIETGASSHSSVSRRGSINQGPLDFNVNDDKFDSRSRNQLARFSSMQSLKQVESRSSKKNKKFEFNSSRVSPIPNGGSHGGPSNVSKSVNPVFGSSKKFFSASVPGSRIVSRATSPISRHHSPPRSTTPTPTLGGLTSPKIGVDDVKKTHDSLNQEITKLRAQVENMTRKTQLQEVELERATKQLKEAIAYAGEETAKCKAAKEVIKSLTNQLKDVAEKLPAGASRNVKFPSIASFESNPCSNEVINSSIDGLNIQATSLEPDLAVLNTQSLSNGLSTTSNRNAGNNKHSQSDATIRNGSRTKEGETRGEVGWVEQDEPGVYITFTSLGGVIDLKRVRFSRKRFSEKQAEQWWAENRARIYEKYNVRGADKSAIDETIYK 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral484g00011 1094 MobiDBLite consensus disorder prediction 719 803 - -
Pral484g00011 1094 Pfam Unstructured region between BRX_N and BRX domain 949 1018 - -
Pral484g00011 1094 SUPERFAMILY RCC1/BLIP-II 261 648 IPR009091 -
Pral484g00011 1094 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 372 426 IPR000408 -
Pral484g00011 1094 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 491 542 IPR000408 -
Pral484g00011 1094 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 651 713 IPR017455 -
Pral484g00011 1094 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 262 319 IPR000408 -
Pral484g00011 1094 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 320 371 IPR000408 -
Pral484g00011 1094 Pfam Transcription factor regulating root and shoot growth via Pin3 1026 1078 IPR013591 -
Pral484g00011 1094 FunFam PH, RCC1 and FYVE domains-containing protein 1 481 652 - -
Pral484g00011 1094 Pfam Regulator of chromosome condensation (RCC1) repeat 320 368 IPR000408 -
Pral484g00011 1094 Pfam Regulator of chromosome condensation (RCC1) repeat 427 475 IPR000408 -
Pral484g00011 1094 Pfam Regulator of chromosome condensation (RCC1) repeat 596 643 IPR000408 -
Pral484g00011 1094 Pfam Regulator of chromosome condensation (RCC1) repeat 490 539 IPR000408 -
Pral484g00011 1094 Pfam Regulator of chromosome condensation (RCC1) repeat 542 591 IPR000408 -
Pral484g00011 1094 Pfam Regulator of chromosome condensation (RCC1) repeat 371 423 IPR000408 -
Pral484g00011 1094 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 427 478 IPR000408 -
Pral484g00011 1094 ProSiteProfiles BRX domain profile. 1025 1079 IPR013591 -
Pral484g00011 1094 SUPERFAMILY FYVE/PHD zinc finger 648 718 IPR011011 -
Pral484g00011 1094 MobiDBLite consensus disorder prediction 827 849 - -
Pral484g00011 1094 MobiDBLite consensus disorder prediction 990 1012 - -
Pral484g00011 1094 Pfam Pleckstrin homology domain 16 122 IPR001849 -
Pral484g00011 1094 MobiDBLite consensus disorder prediction 133 187 - -
Pral484g00011 1094 MobiDBLite consensus disorder prediction 719 738 - -
Pral484g00011 1094 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 595 646 IPR000408 -
Pral484g00011 1094 MobiDBLite consensus disorder prediction 990 1025 - -
Pral484g00011 1094 Pfam Transcription factor BRX N-terminal domain 908 941 IPR027988 -
Pral484g00011 1094 FunFam PH, RCC1 and FYVE domains-containing protein 1 233 480 - -
Pral484g00011 1094 Coils Coil 913 933 - -
Pral484g00011 1094 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 413 423 IPR000408 -
Pral484g00011 1094 PRINTS Chromosome condensation regulator RCC1 signature 372 388 IPR000408 -
Pral484g00011 1094 PRINTS Chromosome condensation regulator RCC1 signature 303 316 IPR000408 -
Pral484g00011 1094 PRINTS Chromosome condensation regulator RCC1 signature 590 611 IPR000408 -
Pral484g00011 1094 PRINTS Chromosome condensation regulator RCC1 signature 429 443 IPR000408 -
Pral484g00011 1094 PRINTS Chromosome condensation regulator RCC1 signature 413 429 IPR000408 -
Pral484g00011 1094 PRINTS Chromosome condensation regulator RCC1 signature 532 550 IPR000408 -
Pral484g00011 1094 PRINTS Chromosome condensation regulator RCC1 signature 322 338 IPR000408 -
Pral484g00011 1094 MobiDBLite consensus disorder prediction 780 803 - -
Pral484g00011 1094 Gene3D - 14 131 IPR011993 -
Pral484g00011 1094 FunFam Putative E3 ubiquitin-protein ligase HERC1 653 721 - -
Pral484g00011 1094 MobiDBLite consensus disorder prediction 827 857 - -
Pral484g00011 1094 MobiDBLite consensus disorder prediction 135 165 - -
Pral484g00011 1094 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 306 316 IPR000408 -
Pral484g00011 1094 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 724 IPR013083 -
Pral484g00011 1094 Pfam FYVE zinc finger 647 713 IPR000306 GO:0046872
Pral484g00011 1094 MobiDBLite consensus disorder prediction 752 767 - -
Pral484g00011 1094 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 543 594 IPR000408 -
Pral484g00011 1094 Coils Coil 857 898 - -
Pral484g00011 1094 Gene3D - 243 485 IPR009091 -
Pral484g00011 1094 Gene3D - 486 653 IPR009091 -
Pral484g00011 1094 CDD PH_PLC_plant-like 13 123 - -
Pral484g00011 1094 SMART PH_update 21 125 IPR001849 -
Pral484g00011 1094 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 928 - -
Pral484g00011 1094 SMART fyve_4 645 714 IPR000306 GO:0046872
Pral484g00011 1094 SUPERFAMILY PH domain-like 14 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral484g00011 Pral-Chr484 123796 134347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral484g00011 917 1088 Major Intrinsic Protein MIP AT1G31880 34.043 1.15e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral484g00011 - - cave:132163343 1778.07