Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral484g00007 ATGCGTGTGAGGGAGGCGCGCGTGGGACAAGAGCAGTGTTGTGCTGGTGTTGGCGTTGTGAAGGGGAACACAAGGAACAAGGTACCCAGATGGCCGGGGTTGTTATTGCGTCGGAGGGCTCGAGGTGGAAAGCAGAGACTCCTCAGACAGACACATATTGAGAGAGATATTCATATATCTTCAGTTGTGGCTACCGCAAGGAGGTTGCTTTCTGATTCTGGCGCTTTTGCTGATTGGGCAGCTTCTTCCGCCGGCCGTGCTGCCCCCACCGACGAGCTCTCCCTCGGCTTCAATGCCGGACCTGCCGCTGCTGCGGCTGAGGGATCCGCCACAGGTCCCGCCTCCGGAATGTGGTCTGGTGCCGCCTCAAGGTCGTTCAATTACGGTCTCTCGCAGGAGATGGGAGGCATGCTCGGCCTCCGCGATTTCTACGTGGTGGCTCCGGCGTCGTCGTTCCATCACCACCATCACCATCACCATCACCACGACCAGTCCGTCATGACCGATCCTCATTCGGTGAACAGCTCGAACCCCGCCACTGCGCTCGGCGTCGGCGTTATTCCTCTACTCTCTGCCACGCCGTGCCTTGGCCAGGCGAACGTCAGCGCCGAGAACAACGAGACAACATTGATGAGTAATCGAAGCCGAGGCGGGGCAATTCAGCTGTGGCAAGACCAAGAACCTGAGCACGGTCATTATTTGAAGAAACAAGGTACAACGATGTTCGAACTCAACGACAGTTCGGGGAATCTGATTCAGAACGAGAATGGATTAACCGTCTCCGCCACGAACAGCGGCGGAACAACGTGTCAGGATTGTGGGAACCAAGCGAAGAAGGATTGTAGTTACAGGAGGTGTAGGACTTGCTGTAAGAGTCGGAATTACGACTGCCCAACTCACGTGAAGAGCACGTGGGTGCCTGAGTCGCGGCGGAGGGAACGCCGTCTGATGGCAGCGGCGTCTGCCGCCACTGCCGGTGGATCCACCGGTGCTACTTCTGGTGCCAAGAAACCTAAACTCGTCACATCACAACAACAGACCACAACAAACTCTCACACTTCCACATCTAATAACACTCCTCCTAGAAGCTTCGACACTAGCTCTAGTCACCAAGATGCGGGTTTTAAGGAATCATTACCGGGACAAGTCCGAGTTCCGGCGGTGTTCAAGTGTGTTCGGGTGACGGCGGTGGACGACGGGCAGGATGAGATTGCTTATCAGGCTACTGTCAAGATTTGTGGCCATGTGTTCAAAGGGTTCCTGTATGATCAAGGGGTTGAAAGTAGGGATGTGTATCCGAATTTGTCGGAGCTCCATCTCGGCGGCGGCGGAGGTGGCGGCGGCGGTAATGGGGCTTCATCTTCATCCCCAATGCTGGATCCATCTGATGTATATGTAGCTTCAGGTGGAGGCTTACTTGGAGGAGGAGGATCCACTTATGGTAATCCAATAAATTAA 1458 0.5521 MRVREARVGQEQCCAGVGVVKGNTRNKVPRWPGLLLRRRARGGKQRLLRQTHIERDIHISSVVATARRLLSDSGAFADWAASSAGRAAPTDELSLGFNAGPAAAAAEGSATGPASGMWSGAASRSFNYGLSQEMGGMLGLRDFYVVAPASSFHHHHHHHHHHDQSVMTDPHSVNSSNPATALGVGVIPLLSATPCLGQANVSAENNETTLMSNRSRGGAIQLWQDQEPEHGHYLKKQGTTMFELNDSSGNLIQNENGLTVSATNSGGTTCQDCGNQAKKDCSYRRCRTCCKSRNYDCPTHVKSTWVPESRRRERRLMAAASAATAGGSTGATSGAKKPKLVTSQQQTTTNSHTSTSNNTPPRSFDTSSSHQDAGFKESLPGQVRVPAVFKCVRVTAVDDGQDEIAYQATVKICGHVFKGFLYDQGVESRDVYPNLSELHLGGGGGGGGGNGASSSSPMLDPSDVYVASGGGLLGGGGSTYGNPIN 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral484g00007 485 MobiDBLite consensus disorder prediction 308 378 - -
Pral484g00007 485 Pfam Domain of unknown function (DUF702) 267 427 - -
Pral484g00007 485 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 151 467 IPR007818 GO:0003700|GO:0006355
Pral484g00007 485 MobiDBLite consensus disorder prediction 154 176 - -
Pral484g00007 485 NCBIfam putative zinc finger domain, LRP1 type 269 311 IPR006510 -
Pral484g00007 485 MobiDBLite consensus disorder prediction 325 375 - -
Pral484g00007 485 NCBIfam LRP1 C-terminal domain 379 426 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral484g00007 Pral-Chr484 72285 90332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral484g00007 63 464 C2H2 Transcription Factor Family AT5G12330 48.916 3.66e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pral484g00007 DUF702 1.7e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral484g00007 - - gmx:100817745 465.692