Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4848g00055 ATGGATCAGTGGGAGAGAAAGTCCAGTTCAGGTCGCCAAAAGATCCCAATTGAGAAAATACCAAAGAAAAGGCATCTTCAAGTCACCTTCTCAAAGCGTCATTCTGGACTCTTCAAGAAAGCCAGTGAGCTTTGCACGCTCTGTGGTGTTGAAATCGCCATCATCGTTTTCTCTCCGGCCGACAAGGCCTTCTTCGGCCATCCGGAAGTGGAATCCATCGTCGATCGTTGTATCAGTCCAAACCCCACGTCGGAATCCGGCCCTCACCCTCTAGTGGAGGCTCGCCGGAATGCAAACGTCCGGGAGCTCAACATGCAGCTTACACAGCTTCTAGGGCAACTGGAAATGGAGAGGAAGCGAGGAGAAGAACTGGACCAGGTGAGGAAGGCGAGGCAGAGACAGTTCTGGTGGGAAAACCCTATTCAAGAATTAGGGTTTAATGAGTCCCCGTTTTGA 456 0.511 MDQWERKSSSGRQKIPIEKIPKKRHLQVTFSKRHSGLFKKASELCTLCGVEIAIIVFSPADKAFFGHPEVESIVDRCISPNPTSESGPHPLVEARRNANVRELNMQLTQLLGQLEMERKRGEELDQVRKARQRQFWWENPIQELGFNESPF 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4848g00055 151 ProSiteProfiles MADS-box domain profile. 10 64 IPR002100 GO:0003677|GO:0046983
Pral4848g00055 151 Gene3D - 89 150 - -
Pral4848g00055 151 Coils Coil 97 120 - -
Pral4848g00055 151 Gene3D - 22 84 IPR036879 GO:0003677|GO:0046983
Pral4848g00055 151 FunFam Agamous-like MADS-box protein AGL62 22 87 - -
Pral4848g00055 151 SUPERFAMILY SRF-like 11 83 IPR036879 GO:0003677|GO:0046983
Pral4848g00055 151 PANTHER MADS BOX PROTEIN 12 144 - -
Pral4848g00055 151 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Pral4848g00055 151 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Pral4848g00055 151 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Pral4848g00055 151 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 64 IPR002100 GO:0003677|GO:0046983
Pral4848g00055 151 SMART madsneu2 10 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4848g00055 Pral-Chr4848 293343 307897 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4848g00055 7 148 Type I MADS-box Gene Family AT5G60440 53.691 1.11e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral4848g00055 SRF-TF 9.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4848g00055 - - ccaj:109813387 228.024