Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4848g00051 ATGTCGTCGTCGAGCTCAAATGCAGGTGGAAGGAGGAGTAAGGGTCGCCAGAAGATTGAGATAAAGAAGATGGAGAATGAAAGCAACCTGCAAGTGACCTTCTCGAAGCGACGAGCCGGCCTCTTCAAGAAGGCCAGTGAGCTTTGCACTCTCTGTGGGGTTGAGGTTGCCCTAATCGTCTTCTCTCCCGGCGACAAGGCTTTCTCGTTCGGCCATCCAAGTGTCGATGCTGTTTTGGACCGTTTCCTGAATGGTGGTGTGCCACCACAGCCTCCGTCAGCTTCCATGCAGATGATGGAGGCTCACCGGAGCGCTGCCGTCCAGGAACTTAACGATCAGCTCACTCGCCTCATGGAAGAGCTAGAGGTGGAGAAGAAGCACGGAGAAGAACTCAACAGGAAGTTGAAGGAGATGGAGACCAAGTTCTGGTATGCTCAACCGATTAATAGTCTCACCATGGATCAGCTAGGGAGCTACAAGGCGCGTCTGGAGGAGATGAAGAAGACAATGTGGGGCCGAGCTGATCGGGCTATGCTCCATGTTGCTTCAAATGCCAACAAACCTTCTCAGTTCTATGTGGGTAGCAGCTCTTCCGCGGGCTGCCGGCTGCCGCCGCCACCACCGCCAACGCAGAATATGGCAGCTCCACCTCCACCAGCCCAGGTGTTTCCTCCCCCTCTCGCGCAGCCATTCCTGCAGCAATCTCCGATAATGTTCGAAGGAAACATGATGATGTCGCCACCCCCGCCTTTGCCTCCGCCTCCTCCACCACCTGCTCCTCAAGGATTCCAGCAGTATCAGAACCTGGAAGAGAACAGCGGAGCAGGATACTGTTGA 837 0.5508 MSSSSSNAGGRRSKGRQKIEIKKMENESNLQVTFSKRRAGLFKKASELCTLCGVEVALIVFSPGDKAFSFGHPSVDAVLDRFLNGGVPPQPPSASMQMMEAHRSAAVQELNDQLTRLMEELEVEKKHGEELNRKLKEMETKFWYAQPINSLTMDQLGSYKARLEEMKKTMWGRADRAMLHVASNANKPSQFYVGSSSSAGCRLPPPPPPTQNMAAPPPPAQVFPPPLAQPFLQQSPIMFEGNMMMSPPPPLPPPPPPPAPQGFQQYQNLEENSGAGYC 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4848g00051 278 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 70 IPR002100 GO:0003677|GO:0046983
Pral4848g00051 278 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Pral4848g00051 278 PANTHER MADS BOX PROTEIN 16 170 - -
Pral4848g00051 278 Gene3D - 93 177 - -
Pral4848g00051 278 MobiDBLite consensus disorder prediction 1 22 - -
Pral4848g00051 278 Gene3D - 26 89 IPR036879 GO:0003677|GO:0046983
Pral4848g00051 278 Coils Coil 104 141 - -
Pral4848g00051 278 CDD MADS_MEF2_like 15 85 IPR033896 GO:0000977|GO:0045944
Pral4848g00051 278 MobiDBLite consensus disorder prediction 193 214 - -
Pral4848g00051 278 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Pral4848g00051 278 FunFam Agamous-like MADS-box protein AGL62 26 91 - -
Pral4848g00051 278 MobiDBLite consensus disorder prediction 240 264 - -
Pral4848g00051 278 SUPERFAMILY SRF-like 15 85 IPR036879 GO:0003677|GO:0046983
Pral4848g00051 278 MobiDBLite consensus disorder prediction 243 262 - -
Pral4848g00051 278 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Pral4848g00051 278 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Pral4848g00051 278 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4848g00051 Pral-Chr4848 272958 273794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4848g00051 11 198 Type I MADS-box Gene Family AT5G60440 53.158 1.88e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral4848g00051 SRF-TF 5.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4848g00051 - - pcin:129293114 342.428