Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4846g00070 ATGATCAATATGGACAAGCTTGCCTTCAACTGTTCCTTAGCTTCCATGTTTCTGATCATTTACTCTTTGATAGTTTTGCATGGTACTGAAGCTTCGTTATCATGCCTCCATACTCCATACCCTCATGTGTGCAACCACTATATGACCTCTAATACACTCTCTACTTCATCATCTTCTTCTTCTTCCTCCTTCCATGATATGGCTCTGAAGGTCACTCTGGACCAAGCCATTGAAGCCCAAAAGCTTGTCTCAGCCATGAAACTGGGCAATCACTTCACAGACAATAAGCGAGCCAAGTTAGCCTGGACAGATTGCTTAGAGCTATATGAAGACACTGTTTACCAGCTGAACCGTTCTGTTACGAGCTCCAAAAATCTCAACGATAGGCTCACCTGGTTAAGTGCCTCCATTGCCAACCACCAAACTTGCCAAAATGGCTTCCGTGACTTCAACCTTCATGCACACTTCAGCTTCTTCCCAAATATGTTAACTAACTTCTCCAAATTGATCAGCAATTCCTTAGCCATTACCAAAGCCATGTCGACGACGTCGTCGTCAGGACAAATGGATAATAATGGTGGGAGAAAGTTGTTGTTCGAAGGATTCCCCGACTGGGTTTCGAGCTCGGATAGGAGGCTTCTTGCGGCGGCAGCGGGGGAGGTGGCGCCAAGGGCTGATGTGGTGGTGGCGAAAGATGGGAGTGGGAACTATAAGACGATAATGGAGGGAGTGGAGGCGGCAAGTAAGTTGAGCGGCGGCGGAGGGAGGAGAGTGGTGGTGCACGTAAGAGGGGGGTTGTATGAAGAGAATGTGGAGATTAAGAGGAAAATGAAGAACATAATGATCGTTGGAGATGGGATTGATGTTACCGTTGTTTCGGATGGCAAGAATGCCCAAGAAACTACCACTTTTCGTTCTGCTACATTTGCTGTTTCTGGAGACAACTTCATCGCCCGCGATATAACCTTCCAGAACACCGCCGGGCCTGAGAATCACCAGGCGGTGGCTTTTCGCTCCGGCGCCGACCACTCAGTGTTCTACCGGTGCAGCTTCAAGGGCTACCAAGACACTTTGTACGTCTACTCACAGCGCCAATTCTACCGTGACTGCGATGTCTACGGCACCGTGGACTTCATCTTCGGCGACGCCGTCGCTATCCTCCAGAACTGCAACATCTACGTGAGAAGGCCGACGAGCAACCAGCAGAACACCGTGACGGCGCAGGGGAGATCCGACCCAAATGAGAACACCGGCATTATTCTCCACGGCTGCCACGTGACTGCGTCATCAGACATGAGGCCGGTGCAGAGCTCGTTCAAGACCTTTCTGGGCCGGCCGTGGAAGGAGTACTCAAGGGTGGTGGTGATGAAGAGTAACCTCGACGGCGGGCTGATCGACCCGGCGGGATGGATGCCGTGGAGTGGAAGCTTCGCTCTTGAGACTCTATATTACGGCGAATATATGAACGCAGGAGCAGGAGCAGCCACTGGTGGGAGGGTGAAATGGCCAGGCTTTCATGTAATCACGAGTCCGCTGGAGGCCGGAAAGTTCACAGTTGGGAATTTTCTGGCCGGCGAGTCGTGGATTGCCGGCACCGGCGTCCCTTTCGATGCAGGGTTGTGA 1623 0.5157 MINMDKLAFNCSLASMFLIIYSLIVLHGTEASLSCLHTPYPHVCNHYMTSNTLSTSSSSSSSSFHDMALKVTLDQAIEAQKLVSAMKLGNHFTDNKRAKLAWTDCLELYEDTVYQLNRSVTSSKNLNDRLTWLSASIANHQTCQNGFRDFNLHAHFSFFPNMLTNFSKLISNSLAITKAMSTTSSSGQMDNNGGRKLLFEGFPDWVSSSDRRLLAAAAGEVAPRADVVVAKDGSGNYKTIMEGVEAASKLSGGGGRRVVVHVRGGLYEENVEIKRKMKNIMIVGDGIDVTVVSDGKNAQETTTFRSATFAVSGDNFIARDITFQNTAGPENHQAVAFRSGADHSVFYRCSFKGYQDTLYVYSQRQFYRDCDVYGTVDFIFGDAVAILQNCNIYVRRPTSNQQNTVTAQGRSDPNENTGIILHGCHVTASSDMRPVQSSFKTFLGRPWKEYSRVVVMKSNLDGGLIDPAGWMPWSGSFALETLYYGEYMNAGAGAATGGRVKWPGFHVITSPLEAGKFTVGNFLAGESWIAGTGVPFDAGL 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4846g00070 540 Pfam Pectinesterase 226 525 IPR000070 GO:0030599|GO:0042545
Pral4846g00070 540 PANTHER PECTINESTERASE 21 530 - -
Pral4846g00070 540 SMART PMEI_2 26 176 IPR006501 GO:0004857
Pral4846g00070 540 NCBIfam pectinesterase inhibitor domain 15 180 IPR006501 GO:0004857
Pral4846g00070 540 FunFam Pectinesterase 220 540 - -
Pral4846g00070 540 Gene3D - 221 540 IPR012334 -
Pral4846g00070 540 Pfam Plant invertase/pectin methylesterase inhibitor 34 176 IPR006501 GO:0004857
Pral4846g00070 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 181 IPR035513 -
Pral4846g00070 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 180 IPR035513 -
Pral4846g00070 540 CDD PMEI-like_3 33 182 - -
Pral4846g00070 540 SUPERFAMILY Pectin lyase-like 222 539 IPR011050 -
Pral4846g00070 540 ProSitePatterns Pectinesterase signature 2. 372 381 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4846g00070 Pral-Chr4846 488964 491997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4846g00070 16 540 Carbohydrate Esterase AT1G23200 52.717 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4846g00070 - - lja:Lj4g3v3099630.1 725.317