Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4846g00058 ATGGGCGACATGAAGGATAAATTTAAGACTTTCATGAAGAAAGTCTCTCCATCACCCTCCGGTAAATTCAAGGGTCAAGGAAGAGTTCTAGGATCGTCCTCATCCCCATCTTCATCTTCTCCATCCAGTAGTTCTATTCTTCTCCGTCCTCCTCAGAATTCGGGTCCAAAACCAGGCTCTGCATCGGCGAACTCTCGACCGTTACCCCAGAAAACGATCGATTCGGAGTCGAATAGGAAGGAAGGCTCGAGTAAGTCCAATCCTGATCGCAAACCGGCGGACGGGTTTGACCCTTACGATTCATTGATAACTACGGGGAAGAGATCTAAAAATGGCTGTTCTTTGGATGTGTATGAATGTCCCATATGTGGGCTATCGTTTAGGTCCGAGGAAGAGGTGTCTATACATGTGGATACCTGTCAAGGTAACCCAGTTGAGCCTGATGACGGAAATGGTGTCTTACAATTACCTGACAATGGAGTTCAGTCAAGAACTGAATTGGAGGCTTGCATCAGCATGTATATGTCAGGGAAGCCATCTGAGGGTTCAGTTGAAGTTGTCCTCAAACTGTTGAGGAATATTGTGAAGGAACCAGATAACGCGAAGTATAGGAAAATTAGGCTGACTAATGCAAAGATAAAAGAGGCTGTTAGTGAGGTTGCAGGAGGAATTGAGCTGCTGAGCTATGTAGGATTTGAGCTAAAGGAGGAGGATGGGGAGAGATGGGCAGTGATGGAAGTTCCTATAGAAGATCAAATAAAATTGATGAAGGAGGCAATAGTATTATTGGAATCACCAGTACTACAAGAACCTGCAAAGAGAGACAATTTGGCATCTGAAACATGTGCTGAGATGGATGAAGAGGCAGAACCGAAAAAGGTGGACAGACAGGTAAAGGTCTTCTTTGCTGTACCAGAAAGCATTGCGGCAAAGATTGAGCTGCCAGATTCTTTCTATAACCTTTCAATTGACGAGGTGAAAAGAGAAGCTGAACTAAGGAGGAAAAAAATTGCGGAGTCTCAGCTTTTAATCCCCAAGTCACTAAAAGAAAAGCAAGCAAAAGCTGCTAGGAGGAAATACAGAAAAGCTATGATTCGGATCCAGTTTCCAGATGGAGTAGTGCTTCAAGGTGTATTTAATCCATGGGAACCAACAACTGCTTTATATGAGTTCGCCAGCTCCGCATTGAAAGAACCAAGTTTGGAATTTGACCTAATGCATCCTGTACTTGTTCAACGACGGGTAATCCCTCATTTAGCTAGAGCAGGGGAGAAAGCCGTAACACTAGAGGACGAGGATCTGGTGCCTTCAGCTCTTATTAAGTTGAAACCTCATGAAACGGATTCTGTTGTTTACACAGGCCTCAGAAATGAATTGCTTGAAATCAGTGAACCTCTCTCATGA 1404 0.4402 MGDMKDKFKTFMKKVSPSPSGKFKGQGRVLGSSSSPSSSSPSSSSILLRPPQNSGPKPGSASANSRPLPQKTIDSESNRKEGSSKSNPDRKPADGFDPYDSLITTGKRSKNGCSLDVYECPICGLSFRSEEEVSIHVDTCQGNPVEPDDGNGVLQLPDNGVQSRTELEACISMYMSGKPSEGSVEVVLKLLRNIVKEPDNAKYRKIRLTNAKIKEAVSEVAGGIELLSYVGFELKEEDGERWAVMEVPIEDQIKLMKEAIVLLESPVLQEPAKRDNLASETCAEMDEEAEPKKVDRQVKVFFAVPESIAAKIELPDSFYNLSIDEVKREAELRRKKIAESQLLIPKSLKEKQAKAARRKYRKAMIRIQFPDGVVLQGVFNPWEPTTALYEFASSALKEPSLEFDLMHPVLVQRRVIPHLARAGEKAVTLEDEDLVPSALIKLKPHETDSVVYTGLRNELLEISEPLS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4846g00058 467 Gene3D - 175 263 - -
Pral4846g00058 467 CDD PUB 176 260 - -
Pral4846g00058 467 SMART PGNneu 182 249 - -
Pral4846g00058 467 MobiDBLite consensus disorder prediction 1 103 - -
Pral4846g00058 467 MobiDBLite consensus disorder prediction 73 96 - -
Pral4846g00058 467 Gene3D - 352 445 - -
Pral4846g00058 467 Pfam PUB domain 181 257 IPR018997 -
Pral4846g00058 467 ProSiteProfiles UBX domain profile. 358 442 IPR001012 GO:0005515
Pral4846g00058 467 SUPERFAMILY Ubiquitin-like 329 442 IPR029071 -
Pral4846g00058 467 FunFam UBX domain-containing protein 6 352 443 - -
Pral4846g00058 467 SUPERFAMILY PUG domain-like 177 261 IPR036339 -
Pral4846g00058 467 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 466 - -
Pral4846g00058 467 MobiDBLite consensus disorder prediction 27 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4846g00058 Pral-Chr4846 387600 392188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4846g00058 1 390 C2H2 Transcription Factor Family AT2G01650 55.556 6.59e-142 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4846g00058 PUB 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4846g00058 K14011 - qsa:O6P43_025896 595.119