Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4846g00046 ATGCAAGGCTATCCATTTCTTCAAGATCATTCTCGAATATTCTCTTCAAGAAGGAAAGCTTATTCTTTTCAGAAAGTGCCAGACAATTTTATACAAAAATATGGAGGTGGCATGAAAAATCCCGTTTGTCTGAGGCCTCCAGATGGAACTCAATGGGAAATACATTGGGCAAAATATGAAAATGGTGAGGTTTGGTTTGAGAAGGGTTGGCATGAAGTTGTCAGATACTACTCTTTAGATCACGGCCATTTGGTGGTGTTCAAATATGAGGGAACTGGAACTTGTTACTTTAATGTGAACATTTTTGACAAGAGTGCATTAGAAATAGACTACCCTCTTCGTAGAAACATCCAACAAATTAATGATGATTCTGATTCAGTTGAAATCTTGCATGAGAAGCCTCCTCTGCCTAAAGTAATGAGCCGAAAACCGCCATTATCATCTTCTATTCGCCCTTGCAAGAAAATTAGAGCTGAAGAAGCTGAAAGGACGTCTAATCAGAAAAAAATGCACTCAGATGGGAATAAGCTATTGTCCATGAAAGCAGAACCGAATCTTATCAAGCTTGAATCAGAAGAAACCGCGGGTAGGAGCAATTTTTCCACTAAAAAAAGTCCAAAATCCTTGGCTATTAAAAAACAAAAGGAGAAACCACTGACTTGGGATGAGAAGGACAGAGCTTTACAGAGAGTCAACACTTTCACGGCCAAAAATCCCTATTTCAAAATTGTCATGCAACCAGCATATGTCAAGAGCTCTTTGAATGTACCGGCAAATTTTGTGAATCAGTATTTGAAGCAGAAGAAAGAAGGAGCAGTTCTTCTGCGGGTTTCAGATGGTAGAACTTGGCGTGTGAAGTGCAATAGGGAAGAAGGAAAGCAGTACAAGTTCCGCCTCAATAGAGGGTGGCCCTGTTTTGCAAAAGACAATAACTTAGAAGTGGGTGATGTGTGTGTTTTTGAACTCACGAACACCATTAACATCTCCTTCCTAGTTCATGTTTTTGGAAATTCTGGGAATCCATATGACTGA 1032 0.3963 MQGYPFLQDHSRIFSSRRKAYSFQKVPDNFIQKYGGGMKNPVCLRPPDGTQWEIHWAKYENGEVWFEKGWHEVVRYYSLDHGHLVVFKYEGTGTCYFNVNIFDKSALEIDYPLRRNIQQINDDSDSVEILHEKPPLPKVMSRKPPLSSSIRPCKKIRAEEAERTSNQKKMHSDGNKLLSMKAEPNLIKLESEETAGRSNFSTKKSPKSLAIKKQKEKPLTWDEKDRALQRVNTFTAKNPYFKIVMQPAYVKSSLNVPANFVNQYLKQKKEGAVLLRVSDGRTWRVKCNREEGKQYKFRLNRGWPCFAKDNNLEVGDVCVFELTNTINISFLVHVFGNSGNPYD 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4846g00046 343 Pfam B3 DNA binding domain 241 335 IPR003340 GO:0003677
Pral4846g00046 343 Pfam B3 DNA binding domain 25 104 IPR003340 GO:0003677
Pral4846g00046 343 SUPERFAMILY DNA-binding pseudobarrel domain 22 105 IPR015300 -
Pral4846g00046 343 Gene3D - 8 106 IPR015300 -
Pral4846g00046 343 SMART B3_2 241 338 IPR003340 GO:0003677
Pral4846g00046 343 SMART B3_2 13 105 IPR003340 GO:0003677
Pral4846g00046 343 MobiDBLite consensus disorder prediction 193 216 - -
Pral4846g00046 343 MobiDBLite consensus disorder prediction 193 207 - -
Pral4846g00046 343 CDD B3_DNA 239 335 IPR003340 GO:0003677
Pral4846g00046 343 Gene3D - 219 338 IPR015300 -
Pral4846g00046 343 ProSiteProfiles B3 DNA-binding domain profile. 239 338 IPR003340 GO:0003677
Pral4846g00046 343 CDD B3_DNA 26 103 IPR003340 GO:0003677
Pral4846g00046 343 SUPERFAMILY DNA-binding pseudobarrel domain 235 338 IPR015300 -
Pral4846g00046 343 ProSiteProfiles B3 DNA-binding domain profile. 9 105 IPR003340 GO:0003677
Pral4846g00046 343 PANTHER B3 DOMAIN-CONTAINING 19 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4846g00046 Pral-Chr4846 283719 285646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4846g00046 5 335 B3 DNA Binding Superfamily AT3G18990 29.577 3.59e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4846g00046 B3 8.5e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4846g00046 - - pcin:129311873 501.13