Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4846g00045 ATGGCTTCTCAATGTCACCCATGCAAGGCTATCCATTTCTTCAAGATCATTCTCGAATATTCTCTTCAAGAAGGAAAGCTTAAAGTGCCAGACAATTTTATACAAAAATATGGAGGTGGCATGAAAAATCCCGTTTGTCTGAGGCCTCCAGATGGAACTCAATGGGAAATACATTGGGCAAAATATGAAAATGGTGAGGTTTGGTTTGAGAAGGGTTGGCATGAAGTTGTCAGATACTACTCTTTAGATCACGGCCATTTGGTGGTGTTCAAATATGAGGGAACTGGAACTTGTTACTTTAATGTGAACATTTTTGACAAGAGTGCATTAGAAATAGACTACCCTCTTCGTAGAAACATCCAACAAATTAATGATGATTCTGATTCAGTTGAAATCTTGCATGAGAAGCCTCCTCTGCCTAAAGTAATGAGCCGAAAACCGCCATTATCATCTTCTATTCGCCCTTGCAAGAAAATTAGAGCTGAAGAAGCTGAAAGGACGTCTAATCAGAAAAAAATGCACTCAGATGGGAATAAGCTATTGTCCATGAAAGCAGAACCGAATCTTATCAAGCTTGAATCAGAAGAAACCGCGGGTAGGAGCAATTTTTCCACTAAAAAAAGTCCAAAATCCTTGGCTATTAAAAAACAAAAGGAGAAACCACTGACTTGGGATGAGAAGGACAGAGCTTTACAGAGAGTCAACACTTTCACGGCCAAAAATCCCTATTTCAAAATTGTCATGCAACCAGCATATGTCAAGAGCTCTTTGAATGTACCGGCAAATTTTGTGAATCAGTATTTGAAGCAGAAGAAAGAAGGAGCAGTTCTTCTGCGGGTTTCAGATGGTAGAACTTGGCGTGTGAAGTGCAATAGGGAAGAAGGAAAGCAGTACAAGTTCCGCCTCAATAGAGGGTGGCCCTGTTTTGCAAAAGACAATAACTTAGAAGTGGGTGATGTGTGTGTTTTTGAACTCACGAACACCATTAACATCTCCTTCCTAGTTCATGTTTTTGGAAATTCTGGGAATCCATATGACTGA 1041 0.3996 MASQCHPCKAIHFFKIILEYSLQEGKLKVPDNFIQKYGGGMKNPVCLRPPDGTQWEIHWAKYENGEVWFEKGWHEVVRYYSLDHGHLVVFKYEGTGTCYFNVNIFDKSALEIDYPLRRNIQQINDDSDSVEILHEKPPLPKVMSRKPPLSSSIRPCKKIRAEEAERTSNQKKMHSDGNKLLSMKAEPNLIKLESEETAGRSNFSTKKSPKSLAIKKQKEKPLTWDEKDRALQRVNTFTAKNPYFKIVMQPAYVKSSLNVPANFVNQYLKQKKEGAVLLRVSDGRTWRVKCNREEGKQYKFRLNRGWPCFAKDNNLEVGDVCVFELTNTINISFLVHVFGNSGNPYD 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4846g00045 346 CDD B3_DNA 242 338 IPR003340 GO:0003677
Pral4846g00045 346 SUPERFAMILY DNA-binding pseudobarrel domain 238 341 IPR015300 -
Pral4846g00045 346 SMART B3_2 244 341 IPR003340 GO:0003677
Pral4846g00045 346 SMART B3_2 13 108 IPR003340 GO:0003677
Pral4846g00045 346 Gene3D - 222 341 IPR015300 -
Pral4846g00045 346 ProSiteProfiles B3 DNA-binding domain profile. 12 108 IPR003340 GO:0003677
Pral4846g00045 346 MobiDBLite consensus disorder prediction 196 219 - -
Pral4846g00045 346 Gene3D - 7 109 IPR015300 -
Pral4846g00045 346 MobiDBLite consensus disorder prediction 196 210 - -
Pral4846g00045 346 PANTHER B3 DOMAIN-CONTAINING 9 336 - -
Pral4846g00045 346 Pfam B3 DNA binding domain 15 107 IPR003340 GO:0003677
Pral4846g00045 346 Pfam B3 DNA binding domain 244 338 IPR003340 GO:0003677
Pral4846g00045 346 CDD B3_DNA 12 106 IPR003340 GO:0003677
Pral4846g00045 346 ProSiteProfiles B3 DNA-binding domain profile. 242 341 IPR003340 GO:0003677
Pral4846g00045 346 SUPERFAMILY DNA-binding pseudobarrel domain 10 108 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4846g00045 Pral-Chr4846 283719 285982 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4846g00045 13 338 B3 DNA Binding Superfamily AT3G18990 29.714 3.95e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4846g00045 B3 8.7e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4846g00045 - - pcin:129311873 538.11