Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4846g00034 ATGGCGATGGCGAGAGAGATAGGGGAGGAAGGAGAGGTGCAGAACAACGCGGGGAAGAGGCTGAAATGCATGAAGAATGAGGAGAAGGGTCAAACAGGGGAGGAAGCTGTGGAGGATGAAAGTGAGCTTCCCCTCCAGCCCGGCATCTTCTACTATCCAACCACTCCTACGTCTTTCGTTGTCTCCGATGCTCTTGAACCCGATTTTCCCATCATCTATGTCAACAAGGTCTTTGAATTCGTCACCGGCTATCGTGCCGATGAGGTTTTGGGTCGAAACTGTCGGTTCTTACAGTATAGGGACCCTCATGCTCAAAGGAGGCACCCTTTGGTGGATCCTGTTGTTGTTTCTGAGATTAGAAGATGCATTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCCGGAAGGATGGCATTCCTTTAGTGAACAGGCTGAGACTTGCTCCAATTCACGATGATGATGGAACTATGACACATGTAATAGGCATCCAGCTATTTTCTGAAGCAAATATAGATCTAAATCATGTCTCATATCCGGTGTTCAAAGAGACCTGCAGTCAGGAAATTGACAAGACTGGTAAAAATTTTCTGAAGAGTGGACAACCATTATACAGCCAGCACCAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAGGTCTTGGCTCATAACATCTTATCACGCTTGACACCAAGGGATGTTGCATCAATTGGGTCTGTGTGCAGAAGGATCCGTCAATTAACACAGAATGAACATGTTAGAAAGATGGTGTGTCAAAATGCATGGGGAAAAGAAGTGACCGGTGCATTGGAACTCATGACCCAGCAGTTAGGATGGGGTCGTCTTAGCCGAGAGCTAACCACTCTTGAGGCTGTTTGTTGGAGAAAACTGACAGTTGGAGGTGCAGTAGAGCCTTCGCGCTGCAATTTCAGTGCTTGCGCTGCGGGAAATCGCCTCGTACTGTTTGGAGGTGAAGGAGTTGATATGCAGCCCATGGATGACACTTTTGTCCTCAATCTTGATGCTAAAAATCCTGAGTGGCGTAGGATTAGTGTGAAATCATCCCCACCAGGAAGGTGGGGCCACACACTCTCCTGCTTAAATGGTTCTTGGTTGGTGGTATTTGGAGGATGTGGTAGGGAAGGATTGCTTAATGACGTGTTTGTTCTTGATTTGGATGCTCAACAGCCAACATGGAAAGAAGTCTGTGGTGGAACTCCGCCCCTCCCTAGATCTTGGCACAGCTCTTGCACTGTTGAAGGGTCTAAATTGGTAGTCTCAGGTGGGTGCACAGATGCTGGGGTACTACTTAGTGACACATACCTACTGGACCTTACTACGGATAATCCAACATGGAGAGAAATTCCAACTTCTTGGGCTCCTCCTTCTCGGTTGGGGCACTCACTCTCTGTATATGGCAGAACAAAAATTCTCATGTTTGGGGGACTTGCCAAGAGTGGACACTTGCGATTACGATCAGGGGAGGCTTATACGATTGATTTGGAAGATGAAGAGCCTCAGTGGAGGCAGCTAGAATGTAGCGCATTCTCTGGAATAGGCAGTCAAAGTGCTGTGGTTCCTCCACCTCGGCTAGATCATGTTGCAGTGAGCATGCCTTGTGGGAGGATTATTGTTTTTGGAGGCTCCATTGCAGGGCTTCACTCTCCATCCCAGCTCTTTCTTTTGGACCCTTCTGAGGAGAAACCGTCATGGAGAATCCTCAATGTGCCGGGACAACCGCCAAAATTTGCTTGGGGTCACAGCACTTGTGTGGTCGGGGGGACTAGGGTTTTGGTTTTGGGTGGACGTACAGGGGAAGAGTGGATACTTAATGAGTTGCATGAGTTATGCTTAGCAAGCAGGCAGGACTCCGACCTAAGGTGA 1890 0.4804 MAMAREIGEEGEVQNNAGKRLKCMKNEEKGQTGEEAVEDESELPLQPGIFYYPTTPTSFVVSDALEPDFPIIYVNKVFEFVTGYRADEVLGRNCRFLQYRDPHAQRRHPLVDPVVVSEIRRCIEEGIEFQGELLNFRKDGIPLVNRLRLAPIHDDDGTMTHVIGIQLFSEANIDLNHVSYPVFKETCSQEIDKTGKNFLKSGQPLYSQHQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTQNEHVRKMVCQNAWGKEVTGALELMTQQLGWGRLSRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRISVKSSPPGRWGHTLSCLNGSWLVVFGGCGREGLLNDVFVLDLDAQQPTWKEVCGGTPPLPRSWHSSCTVEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEEPQWRQLECSAFSGIGSQSAVVPPPRLDHVAVSMPCGRIIVFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGRTGEEWILNELHELCLASRQDSDLR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4846g00034 629 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 39 622 - -
Pral4846g00034 629 SUPERFAMILY F-box domain 208 270 IPR036047 GO:0005515
Pral4846g00034 629 FunFam Adagio protein 1 48 177 - -
Pral4846g00034 629 MobiDBLite consensus disorder prediction 12 32 - -
Pral4846g00034 629 Pfam Galactose oxidase, central domain 309 359 - -
Pral4846g00034 629 CDD PAS 55 165 IPR000014 -
Pral4846g00034 629 SUPERFAMILY Kelch motif 295 514 IPR015915 GO:0005515
Pral4846g00034 629 ProSiteProfiles PAS repeat profile. 71 102 IPR000014 -
Pral4846g00034 629 SUPERFAMILY PYP-like sensor domain (PAS domain) 66 166 IPR035965 -
Pral4846g00034 629 Gene3D - 208 259 - -
Pral4846g00034 629 Pfam F-box domain 215 252 IPR001810 GO:0005515
Pral4846g00034 629 FunFam Putative LOV domain-containing protein 286 491 - -
Pral4846g00034 629 CDD F-box_AtADO-like 214 260 - -
Pral4846g00034 629 Gene3D - 491 624 IPR015915 GO:0005515
Pral4846g00034 629 Gene3D PAS domain 52 177 - -
Pral4846g00034 629 Pfam Galactose oxidase, central domain 374 420 - -
Pral4846g00034 629 Pfam Galactose oxidase, central domain 423 474 - -
Pral4846g00034 629 Pfam Kelch motif 533 580 IPR011498 GO:0005515
Pral4846g00034 629 Pfam PAS domain 65 165 IPR000014 -
Pral4846g00034 629 NCBIfam PAS domain S-box protein 70 165 IPR000014 -
Pral4846g00034 629 SUPERFAMILY Kelch motif 528 618 IPR015915 GO:0005515
Pral4846g00034 629 Gene3D - 288 490 IPR015915 GO:0005515
Pral4846g00034 629 FunFam Putative LOV domain-containing protein 492 624 - -
Pral4846g00034 629 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4846g00034 Pral-Chr4846 208962 212899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4846g00034 54 167 AGC Kinase Gene Family AT5G58140 42.982 1.41e-21 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4846g00034 K12116 - gmx:100301889 1170.61