Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4846g00029 ATGGCTGCTTTGCAGAGAGTGACACAGTCAAGCATGACCACTAGTGTAAGCAGCTATGGCAGCTGCAAAGGTGGTGGTGCTGCATCTATTGAGAAGGTGGTTCCTGATAAGTTCCCAGTTGGTCTGAGGGTTCTCGTTGTGGACGATGACATCACTACTCTGAAAATCATCGAACAAATGTCTCTTAAGTGTCATTATCGCGTCACCACGTGTTCTGAGGCTACTGTTGCTTTAAATCTTCTACGAGAAAAAGGCTGTTTTGACGTAGTACTGAGTGATGTTTATATGCCTGACATGGATGGTTATAAACTCCTAGAACATGTTGGGCTGGAGATGGATCTTCCTGTTATCATGATGTCTGCTGACGGTAGAACAAGTGCTGTGATGAAGGGTATTAGACATGGGGCTTGTGACTATTTGATTAAGCCTGTTCGTGAGGAGGAATTGCGGAATATATGGCAGCACGTTCTTAGGAAAATGTGGAATGAAAATAAAGAACATGAAAATTCTGGCAGCTTGGAAGACAATGATAGGAATAAACAAGGAACTGATGATACTGAATATGCTTCATCTGTAATTGATGCGGCAGAAGTAGTTAAAGTGCCAAAAAAGAGGATAAGCTCAAAAGAAGATGATGATGGTGAGCTGGAGAATGATGATCCATCTACATCTAAGAAACCCCGTGTGGTCTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAACCAACTTGGGCTTGACAAGGCTGTACCAAAGAGAATTCTTGAACTTATGAATGTCCCTGGTTTGACAAGAGAAAATGTTGCGAGTCATCTGCAGAAATTTCGACTTTATTTGAAGAGAATAAGTGGAGTGGCACAACAACAGAATGGGATTCCAAACACAGTCTCTGGGTCTATGGAATCCAGGCTAGGAGGACTTGGAAGGTTAGACATCCAAGCTCTTGCTGCTGCTGGCCAAGTTCCTCCTCAAACACTGGCAGCCCTTCATGCAGAACTCTTAGGTCGTCCGGCCACTAACTTGGTGCCGACTGTAGACCAGACTTCTCTTCTGCAAGCTTCCATACAAGGCCCGAAGCATTCCCCTGCAGAACATTCTGTGGCATATGGTCAGCCTCTAGTAAAATGTCCTTCCAACGTTGCCAAGAATTTTCCTCGATCCATCCTTACTGTGGATGATGCATCTCGAGGTTATGGAACATGGCCGCCATCTGATACAATTGGTTCAATGGCACCCAATAGTAATCATGGAAGGGTGGGTGTTCAAAATAATGACATGCTGGTGGATATACTGCAGCACCAGCAAAGGCAGCAGTTCCAGCAAACACAGCAGCATAAGCTGCAGCAGCAATCGCTGATGCATGATCAAAGTCGTTCCATCAATGTTCAGCCATCTTGCTTGGTGGCTCCCTCTCAGACTTCAGGCACCTTCCAGGTTAACGGTCCTGCTTCTGTCAACCAGAATTCCAGTTTGGCCAGGAATGTCCTTATGGATTATAGTCTCTTTACACCGCAATCGAATCATCCTTCATTAAATATTGCTCAATTTCCTGGCGGGGACACCAAAGCTAAAGGTGTTCTTTGTGGATATGTGGCTCCAAGCTCCATTTCGCACTCAACATCGTCGCATCCAATAAGCGCTAACAACAGCAATATCCAACAGCTTCATAACCCATCTTTGGCATTCGGTACTGTTAGACCTTTGCCAACTCTTTCATCAAACGTGTCTGAGACACAAGTTCCATATGGTGGTACTAAATCTGGTGATGCAATTGATCAAGCACATGTAAGAAATCTTGGATTTGTTGGCCAAGGTAGCAGTATTCCAAGTAGGTTTGCTGCTCATGAAATTGAATCATCCGTCAGTGACTTAAGTCAGGGAAAAATCCCTCTAGATAGCAATGGTAACACAGTGAAGCAGGAGCCAAATATGGATTTTATGGATAATTCAAAAGTGGGCTCCCCAGTCTTACAAAGATATCCATCTGATCCCATGAATGTGTTCGCTGAATAG 2019 0.4433 MAALQRVTQSSMTTSVSSYGSCKGGGAASIEKVVPDKFPVGLRVLVVDDDITTLKIIEQMSLKCHYRVTTCSEATVALNLLREXKGCFDVVLSDVYMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMKGIRHGACDYLIKPVREEELRNIWQHVLRKMWNENKEHENSGSLEDNDRNKQGTDDTEYASSVIDAAEVVKVPKKRISSKEDDDGELENDDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRISGVAQQQNGIPNTVSGSMESRLGGLGRLDIQALAAAGQVPPQTLAALHAELLGRPATNLVPTVDQTSLLQASIQGPKHSPAEHSVAYGQPLVKCPSNVAKNFPRSILTVDDASRGYGTWPPSDTIGSMAPNSNHGRVGVQNNDMLVDILQHQQRQQFQQTQQHKLQQQSLMHDQSRSINVQPSCLVAPSQTSGTFQVNGPASVNQNSSLARNVLMDYSLFTPQSNHPSLNIAQFPGGDTKAKGVLCGYVAPSSISHSTSSHPISANNSNIQQLHNPSLAFGTVRPLPTLSSNVSETQVPYGGTKSGDAIDQAHVRNLGFVGQGSSIPSRFAAHEIESSVSDLSQGKIPLDSNGNTVKQEPNMDFMDNSKVGSPVLQRYPSDPMNVFAE 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4846g00029 673 MobiDBLite consensus disorder prediction 168 188 - -
Pral4846g00029 673 Pfam Response regulator receiver domain 44 153 IPR001789 GO:0000160
Pral4846g00029 673 Gene3D - 42 218 - -
Pral4846g00029 673 CDD REC_typeB_ARR-like 44 158 - -
Pral4846g00029 673 Pfam Myb-like DNA-binding domain 229 277 IPR001005 -
Pral4846g00029 673 PANTHER TWO-COMPONENT RESPONSE REGULATOR 42 423 IPR045279 GO:0009736
Pral4846g00029 673 SUPERFAMILY CheY-like 41 167 IPR011006 -
Pral4846g00029 673 SMART REC_2 42 154 IPR001789 GO:0000160
Pral4846g00029 673 MobiDBLite consensus disorder prediction 627 673 - -
Pral4846g00029 673 FunFam Two-component response regulator 223 286 - -
Pral4846g00029 673 SUPERFAMILY Homeodomain-like 224 284 IPR009057 -
Pral4846g00029 673 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 283 IPR017930 -
Pral4846g00029 673 FunFam Two-component response regulator 42 179 - -
Pral4846g00029 673 ProSiteProfiles Response regulatory domain profile. 43 158 IPR001789 GO:0000160
Pral4846g00029 673 MobiDBLite consensus disorder prediction 409 423 - -
Pral4846g00029 673 MobiDBLite consensus disorder prediction 403 423 - -
Pral4846g00029 673 MobiDBLite consensus disorder prediction 168 185 - -
Pral4846g00029 673 MobiDBLite consensus disorder prediction 204 226 - -
Pral4846g00029 673 PIRSF RR_ARR_type-B 22 666 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pral4846g00029 673 NCBIfam myb-like DNA-binding domain, SHAQKYF class 227 280 IPR006447 GO:0003677
Pral4846g00029 673 Gene3D - 223 286 - -
Pral4846g00029 673 MobiDBLite consensus disorder prediction 627 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4846g00029 Pral-Chr4846 193170 198796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4846g00029 76 341 Response Regulator Gene Family AT3G16857 55.245 5.00e-95 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pral4846g00029 Response_reg 5.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4846g00029 - K14491 pcin:129311779 1210.67