Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4843g00099 ATGCTAGACAGTAGTGCTAATTCTTCTGATGCGGCTTCCTCAGAAAATAATGGAGTGATCCTTCCCAAAAGAAAAAGAAGACCTCCGGGCACACCAGATCCAGATGCTGAGGTCGTGTGTTTGTCACCGAAGACTTTGTTGGAATCAGACAGATACGTGTGTGAGATCTGTAATCAAGGGTTTCAAAGAGACCAGAATCTTCAGATGCACAGAAGAAGACATAAGGTGCCTTGGAAATTGCTGAAAAGGGAGAGTAGCAGTGCGCAAGAGGCGAAGAAGAAGGTGTTTGTGTGCCCTGAGCCTACTTGTTTGCACCATAATCCTTGCCATGCTCTTGGAGATCTCGTGGGCATCAAGAAGCATTTTAGGAGGAAGCATAGTAATCACAAGCAGTGGGTTTGTGAGAAGTGTTCTAAAGGATATGCTGTCCAGTCTGATTACAAAGCTCACCTCAAAACCTGCGGCACCAGAGGCCATTCCTGCGACTGTGGTCGGGTCTTTTCCAGGTAA 510 0.4667 MLDSSANSSDAASSENNGVILPKRKRRPPGTPDPDAEVVCLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESSSAQEAKKKVFVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSR 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4843g00099 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Pral4843g00099 169 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 169 IPR031140 -
Pral4843g00099 169 MobiDBLite consensus disorder prediction 1 37 - -
Pral4843g00099 169 Pfam Zinc finger, C2H2 type 52 74 IPR013087 -
Pral4843g00099 169 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Pral4843g00099 169 MobiDBLite consensus disorder prediction 1 16 - -
Pral4843g00099 169 SUPERFAMILY beta-beta-alpha zinc fingers 49 75 IPR036236 -
Pral4843g00099 169 FunFam protein indeterminate-domain 12-like 31 102 - -
Pral4843g00099 169 Gene3D Classic Zinc Finger 30 100 - -
Pral4843g00099 169 SMART c2h2final6 52 74 IPR013087 -
Pral4843g00099 169 SMART c2h2final6 96 126 IPR013087 -
Pral4843g00099 169 SMART c2h2final6 132 159 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4843g00099 Pral-Chr4843 460687 461492 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4843g00099 5 169 C2H2 Transcription Factor Family AT1G25250 81.212 3.39e-99 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4843g00099 zf-C2H2 0.0012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4843g00099 K25871 - zju:107429215 309.686