Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4843g00098 ATGCTAGACAGTAGTGCTAATTCTTCTGATGCGGCTTCCTCAGAAAATAATGGAGTGATCCTTCCCAAAAGAAAAAGAAGACCTCCGGGCACACCAGATCCAGATGCTGAGGTCGTGTGTTTGTCACCGAAGACTTTGTTGGAATCAGACAGATACGTGTGTGAGATCTGTAATCAAGGGTTTCAAAGAGACCAGAATCTTCAGATGCACAGAAGAAGACATAAGGTGCCTTGGAAATTGCTGAAAAGGGAGAGTAGCAGTGCGCAAGAGGCGAAGAAGAAGGTGTTTGTGTGCCCTGAGCCTACTTGTTTGCACCATAATCCTTGCCATGCTCTTGGAGATCTCGTGGGCATCAAGAAGCATTTTAGGAGGAAGCATAGTAATCACAAGCAGTGGGTTTGTGAGAAGTGTTCTAAAGGATATGCTGTCCAGTCTGATTACAAAGCTCACCTCAAAACCTGCGGCACCAGAGGCCATTCCTGCGACTGTGGTCGGGTCTTTTCCAGGGTTGAGAGTTTCATTGAACATCAAGACGCGTGTACTGTTCGAACAGCTTCGAGCACCAGTCCATCGAGTGAGGCCAATTTAGTTCCATTAATGCAAGGCTTGGCTGTGCCAAAACCACCTGCATTGTTGACCTCGGACTTACAAAACAATAAGCCTCCCTACACCGCTACTTCTCATCAGAGACATAATAATCTGGAAGAACTCCAGCTCCTACGTTGTTCTTCTTCATCGGATGCTCGAGGAAACCGAGGTTCTGATCATGAGGACGATAACAACCACGAAACTGATCAGACCCATCTGAAGCTTTCAATAGGGTCATGCAGTCACAATATTAACACCAACAGGAATGTTGCGAACGAAGCAGAAGCAGAAGAAGCACCGAGACTAAGGGAAGTGGGGTGGTTGAAAGAGTGTGCTAGTGAAGAGCTCAAGTTGGCTATGGCTGAGAAGGCTTATGCAGAAGAGGCTAGAAGAGAGGCTAAGCGTGAGATAGAGATGGCTGAGATTGAGTTTGGGAAAGCAAAGAAGATAAGGAAGGAAGCTCAGGATGAGCTAGAGAGAGCAGAGGCTTTGAAGAAGCAAGCCATGATGAAGACGAGTTCCACTCTGCTGCAAATCACTTGTCAGGCTTGTAAGCAACAGTTCCAATCCTCCATTGCTGGGGTTTCGTCAGAAGAGACATCACTTGTTATGAGCTGCATGTCCTCCCCCACCACTGAAGGAGAAGGAGATCAATGA 1245 0.4699 MLDSSANSSDAASSENNGVILPKRKRRPPGTPDPDAEVVCLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESSSAQEAKKKVFVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRTASSTSPSSEANLVPLMQGLAVPKPPALLTSDLQNNKPPYTATSHQRHNNLEELQLLRCSSSSDARGNRGSDHEDDNNHETDQTHLKLSIGSCSHNINTNRNVANEAEAEEAPRLREVGWLKECASEELKLAMAEKAYAEEARREAKREIEMAEIEFGKAKKIRKEAQDELERAEALKKQAMMKTSSTLLQITCQACKQQFQSSIAGVSSEETSLVMSCMSSPTTEGEGDQ 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4843g00098 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Pral4843g00098 414 MobiDBLite consensus disorder prediction 1 37 - -
Pral4843g00098 414 Gene3D Classic Zinc Finger 30 100 - -
Pral4843g00098 414 MobiDBLite consensus disorder prediction 250 266 - -
Pral4843g00098 414 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Pral4843g00098 414 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 387 IPR031140 -
Pral4843g00098 414 Coils Coil 312 367 - -
Pral4843g00098 414 SMART c2h2final6 52 74 IPR013087 -
Pral4843g00098 414 SMART c2h2final6 96 126 IPR013087 -
Pral4843g00098 414 SMART c2h2final6 132 159 IPR013087 -
Pral4843g00098 414 FunFam protein indeterminate-domain 12-like 31 102 - -
Pral4843g00098 414 MobiDBLite consensus disorder prediction 1 16 - -
Pral4843g00098 414 MobiDBLite consensus disorder prediction 244 266 - -
Pral4843g00098 414 SUPERFAMILY beta-beta-alpha zinc fingers 51 152 IPR036236 -
Pral4843g00098 414 Gene3D Classic Zinc Finger 117 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4843g00098 Pral-Chr4843 457750 460534 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4843g00098 23 411 C2H2 Transcription Factor Family AT2G01940 57.279 6.36e-144 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4843g00098 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4843g00098 K25871 - qsa:O6P43_032402 484.182