Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4843g00090 ATGGCGGGTGGAAAATCAATCAGGTCGAACCCGTCACAGGCTAGAAAGAGAGTTGATGCTGTCGATTCTCGCGCTGCTAATGGTCTTGTCCGCGCCAAAGATGGCAGTGCTTTTGCCAAATGTGAAGAGTGCAACAAGAATGTTCCTGCGGCCCTCATCAACATGCATAGTTGCAGCCTTGATGCTAAAATTAAAATGAATCTGGAAGCGCAGGTTGTGGAAAAGCCTGCTGAGGTCAAGAAGCCAACGGAGAGGAAGAAGCCTAAATCAAGTGAGCCTAAGGCAAAAAAGGCCAAGGTGGAGAAGGAGAAGGGGAAGAAGGGCAAGGATCCTAACAAGCCCAAGCGCCCTCCTACAGCCTTCTTTGTCTTCCTGGAAGAGTTTAGAAAATCTTTTAAGGAGGCAAATCCTGATTCAAAGGATGTTAAAAGGGTTGGTAAGGAGGCAGGAGAGAAGTGGAAGTCCTTGTCTGACGAGGAGAAGAAGCCTTACGTGGACAGAGCTGCTGAACTGAAGGCAGAATACGAAAAAGCATTGGAAAGTTATAATGCCGCAGAAGACAGAGCTGATCAAGAGGGATCTGATAAGGAGGATGCGGTTGAGGAAGCTGGTCAAGAGGAGTCCGAGAAAGATGACACGACAAAGGAAAATGAAGAGCTCACTGATGAGGAGTAG 675 0.4785 MAGGKSIRSNPSQARKRVDAVDSRAANGLVRAKDGSAFAKCEECNKNVPAALINMHSCSLDAKIKMNLEAQVVEKPAEVKKPTERKKPKSSEPKAKKAKVEKEKGKKGKDPNKPKRPPTAFFVFLEEFRKSFKEANPDSKDVKRVGKEAGEKWKSLSDEEKKPYVDRAAELKAEYEKALESYNAAEDRADQEGSDKEDAVEEAGQEESEKDDTTKENEELTDEE 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4843g00090 224 CDD HMG-box_AtHMGB1-like 115 175 - -
Pral4843g00090 224 Gene3D High mobility group box domain 96 199 IPR036910 -
Pral4843g00090 224 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 14 218 - -
Pral4843g00090 224 MobiDBLite consensus disorder prediction 135 165 - -
Pral4843g00090 224 Pfam HMG (high mobility group) box 114 183 IPR009071 -
Pral4843g00090 224 Coils Coil 165 223 - -
Pral4843g00090 224 MobiDBLite consensus disorder prediction 74 114 - -
Pral4843g00090 224 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 114 183 IPR009071 -
Pral4843g00090 224 SMART hmgende2 113 184 IPR009071 -
Pral4843g00090 224 MobiDBLite consensus disorder prediction 182 224 - -
Pral4843g00090 224 MobiDBLite consensus disorder prediction 72 120 - -
Pral4843g00090 224 SUPERFAMILY HMG-box 100 183 IPR036910 -
Pral4843g00090 224 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4843g00090 Pral-Chr4843 414724 416837 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pral4843g00090 HMG_box 3.1e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4843g00090 K25507 - gmx:100306558 251.521