Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4843g00089 ATGCTCCACAATTTGGATAATGTCCGTGAATTCATCAACTCAACTTGGAGAGTTTGTTCTCTGGTAGGCGGTTGGGTTTCTAGCTTAATATCACAACCCCACAGAGACGTGGAAAGAGAAGGTTATCTAGACTTCATGGCTCAACTGGACTCTATATATATTAGTTCATCAGATGATGACCTGGAGTTGGAGGAGACAGAAACCTCTAATTATAGGAACCTCCCAGGATGGGCTGCTAGAGGAAGTAATGCTGTTTCTGCAGACTCTGGTGGAGGGCTTAAGCAGGATGGTTCTTCTAAATGGGAAAATACTTCGAATGCAAGCTCTTCAAGAGCTTATAATCACTCACAAGTCAAGCACAGTGCTAAACCTTGGTCTAGCAACAATGCACTGAATCACAGAGTAACACAAAGAGATGAATTTTTCAATTTTTCAGAGAATGGAAAAACAAATCAGCATGAGACAGTCAGTTCACGAATGGCTAACACTGGTGCTGATTATGGGAAAATGCCATCTGAACAAGCATCAAAGAGGATCCTTCCATCATATCTCCAGCCATCTACTGAAAGGCCTCTTCCACCTTCTCTCAAGTCATTTTCACCAGATACTAGGTTGAACGGTTTAAAAGATAACATGAGCAGGAGCCAGATTCATGATACCCCTGGGAACCACTATAATGGTGCAATTAGGATTCTTCCTCCAACTTTGATGCACGGAAAAAACCTCCCTATTATGCATTTACCTAGTTCGAGTGAATCTAAAAATCATTCTGGAGCAGGTGAAGAAAGGGCTTCTGAAACTGATGAAAGGCTAATTTATCAGGCAGCATTGGAGGACCTCAATCAGCCAAAGGTTGAAGCTACTTTACCTGATGGTTTATTGTCTGTATCACTTATGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAAACAGAAGTTTGCATTGCTTGGGAGGAATTCTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCGACGATTGCCCTCATACAAATGCAGAGATCCTTGCAGTCAAAATCAAAAACAGATGAGACGTGCAAGCATAAAGCTGAGGCACTAAATTTGGATGAGGACGATGACAATGACAGGGGCAATGATACTGTAGAACGATCTAAAAAGAACAAAGAAGCTGATGATATAAAACCTTCTAAACCGGTTAGTTTGTCTTCAACACAGGTGCTAAGTAGTAAAAGACCAGCTGCTGGTACACTGGTTGTCTGCCCTGCTAGTGTTCTCCGACAGTGGGCGAGGGAACTGGAAGACAAAGTTGGCGATGAAGCTAAGCTCTCTGTGTTGGTTTATCATGGGGGTAATAGGACAAAGGATCCTGTTGAACTTGCTAATTATGATGTTGTTCTCACAACATATTCTATTGTGACTACTGAAGTTCCAAAGCAACCTTTAGTGGAAGAGGATGAAATTGATGAAAGATATGAGGAAAAATTTGGGTTATCCTTTGAGTCCTCTTATGGTAAAAAGAGGAAAAAGACTTATGATGGGTGTAAAAAGAGTAAAAAGGGTAAAAAGGGTATTGACAGTTCTTTTGATTGTGCTTCTGGCCCTCTTGCACAAGTGGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACGATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGTTTATCTGGTACTCCAATTCAAAATACTATAGACGAATTGTATAGCTACTTCAGATTTCTGAAGTACGATCCCTATGCTGAATACAAGTCTTTCTACAACACAATAAAGGTACCAATATCCAAGAATTCTATCCAGGGTTACAAGAAGCTTCAAGCGGTTCTGAGGGCTATAATGCTACGTCGTACAAAAGGAACATTGATTGATGGGGAGCCTATAGTTAATTTGCCAACTAAAACAATTCAGCTGAATAAGGTGGATTTCTCCATCGAGGAGCGGGCCTTCTACACCAAGCTGGAAGCAGATTCACGAACTCAATTTAAGGCATATGCTGCTGCTGGTACAGTGAATCAAAACTATGCAAATATTCTACTAATGCTCTTGCGCCTCCGTCAAGCTTGTGACCACCCATATCTTGTTAAAGATCATTGTGCTGATGTTGTTGGGGGAAATTCAGTTGAAATGGCGAAAATGCTTCCAAGGGAGATGCTGATTAATCTTTTTAATTGCTTGGAAACATCCTTTGCCATATGTGGCGTTTGCAGTGATCCACCTGAAAATCCAGTTGTTACTATGTGTGGCCATGTTTTCTGTTATCAGTGTGTGTCAGAATTTTTGACTGGCTATGAGAATATCTGCCCTGCCGTTGATTGCAATGAAAAAATTGGTGATGATGTTGTTTTCTCCAAATCTACTCTAAGAAGTGGCATCTCTGGTGGCCTTGGTGATGCTAGTTCTGCAAGTTATCATCACGTTGATTATTCAGTAGCACAGCAGAGAAATTACTGTTCATCTAAAATCAAAGCAGTCCTTGATATTCTGCAGTTATATTGTAAAGTGAAGAGTCCTGGTTCTGACAGACTGAGTTCCTCAGGGTGCAGCAGAAATTCATCTTCTGAAACTTCAGATGATGAAGATTTCTGTTCAGATGTTCGTCCTACAAAATACACAAGAAGATATTCAGAGTGCTCAACTGAAGGATCAATAAAGGCTATTGTTTTTTCCCAGTGGACTAGCATGTTGGACTTAGTTGAACATGCACTGGAAGAGTTCTCCATCCCGTACAGGAGACTAGATGGCTCCATGACGTTGGCTGCAAGGGATAAAGCTGTTAAGGAGTTTAGTACTGATCCTGAGGTGACCGTCATGCTAATGTCATTAAAAGCAGGAAACCTTGGTTTAAACATGGCTGCTGCATGCCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTGTTGATCGTGCTCATAGAATTGGACAGATCCGTCCTGTTACTGTGACACGGCTTACCATAAAAGATACTGTTGAGGATAGAATATTGGCTCTCCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGATCCAGGCGGGGGTTCTGCAGCTCGCCTTACAGTGGACGATCTAAAATATCTTTTCATGGTCTAA 3156 0.4144 MLHNLDNVREFINSTWRVCSLVGGWVSSLISQPHRDVEREGYLDFMAQLDSIYISSSDDDLELEETETSNYRNLPGWAARGSNAVSADSGGGLKQDGSSKWENTSNASSSRAYNHSQVKHSAKPWSSNNALNHRVTQRDEFFNFSENGKTNQHETVSSRMANTGADYGKMPSEQASKRILPSYLQPSTERPLPPSLKSFSPDTRLNGLKDNMSRSQIHDTPGNHYNGAIRILPPTLMHGKNLPIMHLPSSSESKNHSGAGEERASETDERLIYQAALEDLNQPKVEATLPDGLLSVSLMRHQKIALAWMLQKENRSLHCLGGILADDQGLGKTISTIALIQMQRSLQSKSKTDETCKHKAEALNLDEDDDNDRGNDTVERSKKNKEADDIKPSKPVSLSSTQVLSSKRPAAGTLVVCPASVLRQWARELEDKVGDEAKLSVLVYHGGNRTKDPVELANYDVVLTTYSIVTTEVPKQPLVEEDEIDERYEEKFGLSFESSYGKKRKKTYDGCKKSKKGKKGIDSSFDCASGPLAQVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDELYSYFRFLKYDPYAEYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGEPIVNLPTKTIQLNKVDFSIEERAFYTKLEADSRTQFKAYAAAGTVNQNYANILLMLLRLRQACDHPYLVKDHCADVVGGNSVEMAKMLPREMLINLFNCLETSFAICGVCSDPPENPVVTMCGHVFCYQCVSEFLTGYENICPAVDCNEKIGDDVVFSKSTLRSGISGGLGDASSASYHHVDYSVAQQRNYCSSKIKAVLDILQLYCKVKSPGSDRLSSSGCSRNSSSETSDDEDFCSDVRPTKYTRRYSECSTEGSIKAIVFSQWTSMLDLVEHALEEFSIPYRRLDGSMTLAARDKAVKEFSTDPEVTVMLMSLKAGNLGLNMAAACHVILLDLWWNPTTEDQAVDRAHRIGQIRPVTVTRLTIKDTVEDRILALQEEKRKMVASAFGEDPGGGSAARLTVDDLKYLFMV 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4843g00089 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 1050 IPR027417 -
Pral4843g00089 1051 MobiDBLite consensus disorder prediction 348 404 - -
Pral4843g00089 1051 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 99 1050 - -
Pral4843g00089 1051 MobiDBLite consensus disorder prediction 374 392 - -
Pral4843g00089 1051 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 511 642 - -
Pral4843g00089 1051 MobiDBLite consensus disorder prediction 852 866 - -
Pral4843g00089 1051 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 313 592 IPR014001 -
Pral4843g00089 1051 SMART ring_2 746 784 IPR001841 -
Pral4843g00089 1051 ProSitePatterns Zinc finger RING-type signature. 761 770 IPR017907 -
Pral4843g00089 1051 Pfam Helicase conserved C-terminal domain 894 993 IPR001650 -
Pral4843g00089 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 630 IPR027417 -
Pral4843g00089 1051 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 740 796 IPR013083 -
Pral4843g00089 1051 MobiDBLite consensus disorder prediction 851 877 - -
Pral4843g00089 1051 SMART ultradead3 294 600 IPR014001 -
Pral4843g00089 1051 Pfam SNF2-related domain 301 708 IPR000330 GO:0005524|GO:0140658
Pral4843g00089 1051 Gene3D - 645 1049 IPR027417 -
Pral4843g00089 1051 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 883 1046 IPR001650 -
Pral4843g00089 1051 SUPERFAMILY RING/U-box 742 790 - -
Pral4843g00089 1051 MobiDBLite consensus disorder prediction 82 130 - -
Pral4843g00089 1051 MobiDBLite consensus disorder prediction 184 222 - -
Pral4843g00089 1051 MobiDBLite consensus disorder prediction 88 130 - -
Pral4843g00089 1051 CDD SF2_C_SNF 894 1003 - -
Pral4843g00089 1051 Gene3D - 394 486 IPR038718 -
Pral4843g00089 1051 MobiDBLite consensus disorder prediction 184 225 - -
Pral4843g00089 1051 Pfam Zinc finger, C3HC4 type (RING finger) 746 782 - -
Pral4843g00089 1051 Gene3D - 495 642 IPR038718 -
Pral4843g00089 1051 Gene3D - 271 358 IPR038718 -
Pral4843g00089 1051 MobiDBLite consensus disorder prediction 245 267 - -
Pral4843g00089 1051 ProSiteProfiles Zinc finger RING-type profile. 746 782 IPR001841 -
Pral4843g00089 1051 CDD DEXDc_SHPRH-like 298 630 - -
Pral4843g00089 1051 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 393 482 - -
Pral4843g00089 1051 SMART helicmild6 910 993 IPR001650 -
Pral4843g00089 1051 MobiDBLite consensus disorder prediction 350 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4843g00089 Pral-Chr4843 401175 409012 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4843g00089 49 951 RAD5 or RAD16-like Gene Family AT1G50410 55.470 0.0 882
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4843g00089 SNF2_N 9.1e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4843g00089 - - gmx:100795142 1322.38