Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4843g00085 ATGGCTCAGATGGAGTGTATATACATTAGTTCATCAGATGATGACTTGGATCTGGAGGAGATACAAAATCCAAATTATGGAAATCGTTCTGGTTGGCCTGCTCGTGAAAGCAATTCTGGTTATGGGGGAGGGCTTACACTTGATAGTTCTTCGAGATGGGCAAATACTTCAAATGCAAGCTCTTCTGGTGCTTATAATCATTCACCATCTGAGCGCTATACTGAACCAGTGTCCAGCGGTTATATGCCTAATCGCAGAGTTGCATATGGAGATGGATCTTTCAATGTTTCCGAGAATGGAAACACAAGTCAGTTTCAGACAATTAATTCTCGAATTGCTAAATCTTCTGGTGCTGATTATGAGAAAATACCATCCCAACAAGCTTTGAAGAGGACCCTTTTGTCATCGCCTCTGCCAGCTGCAACAAAACCACTTCCATCTTCTCTTCAGTCTTTTGCACCAGGAAGTAGCATGATCAGTGAGCAGAGCACTTTGCGTGATAGCTATGGAAGGGGCAATGATGAACGTGTGATGTATCAAAATGGTGGGATTAGGATTCTTCCTCCGCCTATGATTCATGGAAAGTCTATATCGAACACACAGCTAGCTAGTTCAAGTGAAGCTGTATACCGTTCTGGGCCAGGGGAAGAAAGGGCCTCGGAAAATGATGAGAGACTAATTTATCAGGCGGCACTGGAGGACCTCAACCAGCCAAAATTTGAAGCTAATTTACCTGATGGTTTAATGTCTGTGTCGCTTCTGAGGCATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACGAGAAGTTTGCATTGCTTGGGGGGAATTCTGGCTGATGATCAGGGTCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGGTCATTGCAGTCGAAATCGAAAGCAGATGAGACGAGCAATCATAAAGCTGAAGCATTAAATTTGGATGAGGAGGAAGAAAATGATGATGCTGGTGGTACTGTGGAAAAATCTAAAAATAATGAAGAAGATGATATAAAACCTATGCCTGAATCAGTTAGTTCATCTTCAACAAGGGTGGTTAGCAGGAAAAGACCAGCTGCTGGTACACTGGTTGTTTGCCCTGCCAGTGTTCTCCGACAGTGGGCAAGGGAGTTGGATGACAAAGTAGGAGATGAAGCTAAGCTCTCTGTGTTGATTTATCATGGGGGTAATAGGACTAAGGATCCTGTCGAACTTGCAAAATATGATGTTGTTCTCACAACATATTCGATTGTAACTAATGAGGTTCCAAAGCAACCTTTAGTTGAAGAGGATGAAGTTGATGAAAAAATGGGGGAAAAATTTGGGTTATCCTCTGACTTTGCTTTTGGTAAAAAGAGGAAAAAGGCTTATAATGCAAATAAAAAGAGTAAAAAAGGTAAAAAGGGAATTGACAGTTCTTTTGATTCTGCATCTGGTGCCCTCGCAAAAGTTGGCTGGTTCAGGGTCATTCTAGACGAGGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGACGGTGGTGCTTATCTGGAACGCCTATTCAAAATGCTATTGAAGACCTTTATAGCTACTTCAGATTCCTCAAGTATGATCCTTATGCTGCATATAAATCATTCTACAACACAATAAAAGTGCCGATATCCAAAAATTCTATTCAAGGTTACAAGAAGCTTCAAGCGGTTCTTAGGGCTATAATGCTACGTCGTACTAAAGGAACATTGATTGATGGACAGCCTATAATCACTCTGCCCCCTAAAACTGTTAACCTGAACAAGGTGGATTTCTCCATTGAGGAGCGGGACTTCTACACCAAGTTGGAAGCAGAGTCACGCAGTCAATTTAAGGCATATGCTGCTGCTGGCACCGTCAATCAAAATTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCCTGCGACCACCCACTTCTTGTTAAAGATTATAGTTCTGATTTTGTTGGGGAAAATTCGATAGAAATGGCAAGAACCCTTCCAAGGGAGATGCTAGTCAATCTTTTCAATTGTTTGGAAGCGTCCTTTGCAATATGTAAAGTTTGCAATGATACACCTGATGATCCAGTTGTTACCATGTGTGGCCATGTTTTCTGTTATCAGTGTGTATCAGAACATTTGACGGGTTATGAAAACATGTGCCCGGCTGCTGATTGTAAAGAACAAATTGGTGATGATGTTGTCTTCTCCAAAGCTACATTGAGAAGTTGCATCTCTGGTGACCATCGTGATAATGGTTCTTCAGATTCACGTCTTGATTATTCAGTTGTGCTGCAGAGTAATTACGGTTCATCTAAAATCAAGGCACTCCTTGAGATTCTGGAGCTACATTTGAGTTGCTCTGGCCGTTCTAGAAATTCACTGCCTTCTGAAACTTCAGATACTGAAGACTTTGATTCTGATGTGATTGTTACAAAGCATACAAGAAAATGTTCGGAGAGCACAACTGACGGACCAATGAAGGCTATTGTTTTTTCCCAGTGGACTAGCATGTTGGACTTGGTCGAAGATTCACTGAAGGACTCTGGCATTCGATACAGGAGACTTGATGGCACCATGACACTGGTTGCAAGGGATAAGTCCGTTAAGGATTTCAATACTAATCCTGAGGTAACTGTCTTGCTGATGTCGCTAAAAGCAGGAAACCTTGGTTTGAACTTGGTTGCTGCTTGTCATGTTATTCTTTTAGATCTTTGGTGGAATCCAACAACCGAAGACCAAGCTGTTGATCGAGCTCACAGGATTGGACAGACGCGCCCTGTTACTGTGACACGGCTCACTATAAAAGATACAGTTGAAGATAGAATATTGGCTCTCCAGGAAGACAAGAGAAAAATGGTCGCATCAGCTTTTGGTGAAGATCAAGCCGGTGGGACGGCAACGCGCCTAACAGTGGATGACCTAAAATATCTTTTCATGGTCTGA 2991 0.4219 MAQMECIYISSSDDDLDLEEIQNPNYGNRSGWPARESNSGYGGGLTLDSSSRWANTSNASSSGAYNHSPSERYTEPVSSGYMPNRRVAYGDGSFNVSENGNTSQFQTINSRIAKSSGADYEKIPSQQALKRTLLSSPLPAATKPLPSSLQSFAPGSSMISEQSTLRDSYGRGNDERVMYQNGGIRILPPPMIHGKSISNTQLASSSEAVYRSGPGEERASENDERLIYQAALEDLNQPKFEANLPDGLMSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMIALIQMQRSLQSKSKADETSNHKAEALNLDEEEENDDAGGTVEKSKNNEEDDIKPMPESVSSSSTRVVSRKRPAAGTLVVCPASVLRQWARELDDKVGDEAKLSVLIYHGGNRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVEEDEVDEKMGEKFGLSSDFAFGKKRKKAYNANKKSKKGKKGIDSSFDSASGALAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIEDLYSYFRFLKYDPYAAYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTLIDGQPIITLPPKTVNLNKVDFSIEERDFYTKLEAESRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYSSDFVGENSIEMARTLPREMLVNLFNCLEASFAICKVCNDTPDDPVVTMCGHVFCYQCVSEHLTGYENMCPAADCKEQIGDDVVFSKATLRSCISGDHRDNGSSDSRLDYSVVLQSNYGSSKIKALLEILELHLSCSGRSRNSLPSETSDTEDFDSDVIVTKHTRKCSESTTDGPMKAIVFSQWTSMLDLVEDSLKDSGIRYRRLDGTMTLVARDKSVKDFNTNPEVTVLLMSLKAGNLGLNLVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIKDTVEDRILALQEDKRKMVASAFGEDQAGGTATRLTVDDLKYLFMV 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4843g00085 996 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 585 IPR027417 -
Pral4843g00085 996 CDD DEXDc_SHPRH-like 253 585 - -
Pral4843g00085 996 CDD SF2_C_SNF 839 948 - -
Pral4843g00085 996 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 751 IPR013083 -
Pral4843g00085 996 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 825 991 IPR001650 -
Pral4843g00085 996 MobiDBLite consensus disorder prediction 330 347 - -
Pral4843g00085 996 MobiDBLite consensus disorder prediction 42 77 - -
Pral4843g00085 996 Gene3D - 600 995 IPR027417 -
Pral4843g00085 996 SMART ultradead3 249 564 IPR014001 -
Pral4843g00085 996 MobiDBLite consensus disorder prediction 303 359 - -
Pral4843g00085 996 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 80 995 - -
Pral4843g00085 996 ProSitePatterns Zinc finger RING-type signature. 716 725 IPR017907 -
Pral4843g00085 996 SMART helicmild6 855 938 IPR001650 -
Pral4843g00085 996 Pfam SNF2-related domain 256 662 IPR000330 GO:0005524|GO:0140658
Pral4843g00085 996 Gene3D - 456 596 IPR038718 -
Pral4843g00085 996 Gene3D - 227 313 IPR038718 -
Pral4843g00085 996 Pfam Helicase conserved C-terminal domain 841 938 IPR001650 -
Pral4843g00085 996 ProSiteProfiles Zinc finger RING-type profile. 701 737 IPR001841 -
Pral4843g00085 996 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 348 437 - -
Pral4843g00085 996 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 995 IPR027417 -
Pral4843g00085 996 SMART ring_2 701 739 IPR001841 -
Pral4843g00085 996 SUPERFAMILY RING/U-box 698 751 - -
Pral4843g00085 996 Gene3D - 350 440 IPR038718 -
Pral4843g00085 996 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 268 547 IPR014001 -
Pral4843g00085 996 MobiDBLite consensus disorder prediction 306 320 - -
Pral4843g00085 996 MobiDBLite consensus disorder prediction 18 80 - -
Pral4843g00085 996 Pfam Zinc finger, C3HC4 type (RING finger) 701 737 IPR018957 GO:0046872
Pral4843g00085 996 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 466 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4843g00085 Pral-Chr4843 390947 398956 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4843g00085 11 894 RAD5 or RAD16-like Gene Family AT1G50410 55.778 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4843g00085 SNF2_N 1.7e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4843g00085 - - gmx:100795142 1335.86