Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4843g00056 ATGGCTGACTCACCCTCTCCGGCGCCTGAGCAACCCTTGCTGGATTCTGATGATTCGCAGTACTGGTGCTACCACTGCGAGAAGCGTGTGTCCGTAGAAACGCATCCGGAGGGCCCTGACATTCTCTGTCGCGAGTGCAAGCATGGCTTCGTCGAATCGATTGCTTCCCCGTCTTTGGCTCCTCCCTCTACGACTTCTGATCTGATCGACGATCCTCATTTCGAATCGCAATTCCTGCGCGTACTTCGTCTACTTGCAGAATCGGCGCGTGATGAAGACGCGCCTCCACCTCCGTCTCGAAACCGCTCCTCAGGCGATGATATTCTCAGGGTTGAGTTCGAGGATTGGGATGATGATGGAGAAAGCAGCAACAACAATAACAACGACGAGGACGACGAAGATGATGGGGTGGAGTTTCACGATGAAGGAGAAGAGCAGGAAGGTGCCGAAGAGCACGAAGATCGACTAGGAGAAGAGGACCCAAGTGGAGATGAAACCGAAGAAGATCTGAGAAGGAGGAGTATGCGGAACCGGATCAGAGACTTGACCAGTCGGATCAGAGATTTGGCAACCGGCACGAGGAGCAGGAGGAACAGGATCTTGGACTGGGCTGATATACTGATGGGTCTTGAAGACAATTCCATAGAGCTGAGACTTCAGGTACCTGATTCGGATCGATTTTTCGGGAACCCGGGAGATTACGTCGATGCTGCTGATTATGAAGCTCTGCTGCTGACCATGGCGGAAAGCGACGGAAGCGGGAGAAGAGGGGCTCCACCGGCTGCAAAATCTGCAGTGGAGTCGCTGCCGACGGTGGAGATTGTCTCAGAGGATCAAGCTTTGGTGTGCGCGATATGCAAAGATATGGTGGGTGTGGGAAGCATGGCAAAGCGATTGCCCTGTGGACATCAGTACCATGGGGACTGCATAGTGCCCTGGTTGGGCTCCAGAAACTCATGCCCAGTGTGCAGGTTTGAGCTTCCAACGGATGACCAGGACTATGAGGAGGAAAGGAAGAAGAAGGTGATTACCTCTACTGCTAATGGGGCATCAGGTTCTGGTGGAACCGATGCGATATCGGGTTGA 1086 0.535 MADSPSPAPEQPLLDSDDSQYWCYHCEKRVSVETHPEGPDILCRECKHGFVESIASPSLAPPSTTSDLIDDPHFESQFLRVLRLLAESARDEDAPPPPSRNRSSGDDILRVEFEDWDDDGESSNNNNNDEDDEDDGVEFHDEGEEQEGAEEHEDRLGEEDPSGDETEEDLRRRSMRNRIRDLTSRIRDLATGTRSRRNRILDWADILMGLEDNSIELRLQVPDSDRFFGNPGDYVDAADYEALLLTMAESDGSGRRGAPPAAKSAVESLPTVEIVSEDQALVCAICKDMVGVGSMAKRLPCGHQYHGDCIVPWLGSRNSCPVCRFELPTDDQDYEEERKKKVITSTANGASGSGGTDAISG 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4843g00056 361 MobiDBLite consensus disorder prediction 344 361 - -
Pral4843g00056 361 MobiDBLite consensus disorder prediction 114 165 - -
Pral4843g00056 361 SUPERFAMILY RING/U-box 278 330 - -
Pral4843g00056 361 FunFam E3 ubiquitin-protein ligase RING1-like 246 330 - -
Pral4843g00056 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 147 328 - -
Pral4843g00056 361 Pfam zinc-ribbon 20 54 IPR039525 GO:0061630
Pral4843g00056 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 330 IPR013083 -
Pral4843g00056 361 SMART ring_2 283 323 IPR001841 -
Pral4843g00056 361 MobiDBLite consensus disorder prediction 114 176 - -
Pral4843g00056 361 ProSiteProfiles Zinc finger RING-type profile. 283 324 IPR001841 -
Pral4843g00056 361 Pfam Ring finger domain 283 324 IPR001841 -
Pral4843g00056 361 MobiDBLite consensus disorder prediction 336 361 - -
Pral4843g00056 361 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4843g00056 Pral-Chr4843 293824 295301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4843g00056 194 358 C3H Transcription Factor Family AT5G01980 45.349 1.56e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4843g00056 - - pcin:129312052 615.92