Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4843g00054 ATGTCTCAGACATCTGGGCTATTCCCTGCTTTCCAGTCCTTCGAAGCATTGCAACCTAATGTCAAGTTCACAACTGACCCAACACTTGCTTTTGGGGAAAAACATGAAAATGATGCACTAGGAAGAGAGGTTTCTGAGGAAGTTCAAGACCTTGCTGGTGATATGGATCTTTTTGATGAGGATTCACCATATGGTGAAAGAACTACGTCGTTAGAAAGCAGGCCCTCACCTGGTGATGATGGCGCAGAATCTGCTTCCCATCCACTCCCTTCAATCTCCCCATCGTCCAATGACCACAGGTGGAGTGATACTACGCCTTATCCTTCAAAGAAGATTCATTCTTGGTTTCAACTTCCGAATGGGAATTGGGAGCTGGGGAAGATAATATCCACTTCTGGGGCTGAATCGGTTATCACATTGCCTGATGGAAAAGTTTTAAGGGTTAAAGCTGAAAGTTTGGTTCCGGCAAACCCTGATATTCTTGATGGAGTGGATGACCTTATGCAGCTTAGTTATTTGAATGAACCATCAGTTTTATACAATCTGCAATACAGATACAACCGAAATATGATTTATACAAAAGCAGGGCCTGTTTTGGTTGCAGTAAATCCGTTTAAGAAAGTTCCTCTGTATGGAAATGATTATATTAAAGCATATAAGAATAAAGCTATGGAAAGTCCTCATGTATATGCCATTACAGACACAGCCATCCGGGAAATGAGAAGAGATGAAGTGAATCAATCTATAATTATAAGTGGTGAAAGTGGAGCAGGCAAGACTGAGACAGCAAAGATAGCAATGCAGTACCTGGCTGCCCTTGGAGGCGGAAGTGGAATAGAATATGAGATATTAAAGACTAATCCAATACTAGAAGCCTTTGGCAATGCAAAAACATTGAGAAATGATAACTCAAGTCGTTTTGGGAAACTTATTGAGATTCACTTCAGTGAAACTGGAAAAATATCGGGTGCAAATATTCAGACATTTTTGCTGGAAAAGTCTAGAGTAGTCCAATGCAATGAAGGGGAAAGGTCATATCATATTTTCTATCAGCTGTGTGCCGGGGCTTCGCCTTCGCTGAGGGAGAAGCTAAATCTACGAAGTGCGGAAGAATACAAATATCTGAGGCAGAGCAATTGTTTCTCCATTACTGGTGTTAATGATGCGGAAGAATTTCGCATAGTCATGGAAGCCTTAGATGTTGTCCACGTCAGCAAAGAAAATCAGGAGAATGTATTTGCAATGCTTGCTGCAGTGTTATGGCTAGGAAACATATCATTTACTGTGATTGATAATGAAAATCATGTTCAACCCTTAGAGGATGAGGGTTTGTTCAACGTTGCTAAATTGATTGGCTGTGACATTGGAGATCTGAAGTTGACTTTATCAACTCGCAAAATGAAAGCTGGCAACGACAACATTGTCCAAAAGTTGACGCTACCACAGGCAATTGATGCAAGAGATGCTTTGGCAAAATCAATATATGCATGTTTGTTTGATTGGCTGGTTGAACAAATAAACAATTCACTTGCTGTTGGTAAAAGACGCACTGGTAGATCAATCAGTATTTTAGACATCTATGGATTTGAATCTTTTGAGAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCGAATGAAAGATTGCAACAACACTTTAATCGTCACTTATTCAAGTTAGAACAAGAGGAATATGTACAGGATGGCATTGACTGGGCTAAAGTTGAATTTGAAGACAATCAAGACTGCCTTAATCTTTTCGAAAAGAAACCACTAGGGCTGCTATCCCTTTTAGATGAGGAATCCACTTTCCCAAATGGTACAGATTTGACATTTGCTAACAAGCTTAGGCAGCATCTGAATTCAAATTCATGTTTCCAAGGAGAACGAGGCAAGGCCTTTGCTGTGTGCCATTATGCAGGGGAGGTCACCTATGATACAACTGGATTTTTGGAGAAGAACAGGGACCTATTGCACTTGGATTCCATTCAACTTTTATCCTCATGTACATGCCATCTTCCTAAGATATTTGCAGCCCATATGCTTTTGCAGTCCGAGAAGCCTGTAGCTGGTCCCTTACACAAATCAGGCGGAGCAGATTCCCAAAAGCTAAGTGTTGCCACAAAATTCAAGGGTCAGCTGTTTCAACTTATGCAACGTTTGGAGAGCACCACACCACATTTTATTCGATGCATTAAGCCTAATAACTCCCAGTCACCGGGATCATATGAGCAAGGGCTTGTACTTCAGCAACTGAGATGTTGTGGAGTCCTGGAAGTGGTTCGAATATCAAGATCAGGTTTTCCTACTAGAATGTCTCATCAAAAGTTTGCCAGAAGATATGGTTTTCTTCTCCTTGAAAATGTTGCATCTCAGGATCCACTCAGTGTTTCAGTTGCAATTCTGCATCAGTTTAGTATTTTGCCTGAGATGTATCAAGTTGGGTTCACAAAATTATTTTTCCGAACAGGACAGATTGGAGTGCTTGAAGATACCCGAAATCGTACCCTCCATGGCATCTTACGCGTCCAAAGTTGCTTCAGGGGTCACCGAGCACGTTGTTATCACAAGGAACTTAAGAGAGGAATCACTACTCTCCAGTCATTTGTCAGGGGAGAGAAAACGAGAAAGGAATTTGCAGCTTCACTTCAGCGACATAGAGCTGCTGTTCATATACAGAAGCAGATGAAAGGAGTATTTGCGAGAAACAGAATGAAGAATATTTCTGATGCTGCGATAGTCATTCAATCAGCTATTCGTGGTTCGTTGGCCAGAAGATGCTCAGGAGATATGGGATTGTTGAAATCTATAGGGATGAAGGCCAATGAATCGGACGAGGTGCTAGTCAAGGCATCTTTCCTGACTGAATTACAGCGTCGGGTGCTCAAGGCTGAAGCTGCCCTGAGAGTTAAAAAAGAAGAAAACGACATTCTTCACCAGCGCCTCCAACAGTATGAGAGCCGTTGGTCCGAGTATGAATCGAAGATGAAATCAATGGAAGAAGGGTGGCAGAAACAAATGAGATCCCTACAATCTAGCCTCTCCATTGCAAAAAAGAGCTTAGCAATTGATGATTCTGCAAGAAATTCGGATGCTTCTGTCAATGCAAGTGATGAGAGAGATTATAATTCAGATATAGGAAGCAACCATAGGCGCCAAGAAAGCAGCTCAAGTGTGGGTAATTATCACAGACGCCAAGAAAGCAATGGGTTTAGATCAATGGGTGCAGGCTTCAATGTCATAAGTGGGCTGGCTAATGAATTAGAGCAGAGGCGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTTGAGGTGAAATCTGGTCAAGTTGAAGCAAATTTGAATCCAGAACAGGAGCTTAGAAGGTTGAAACACACGTTCGAAGCTTGGAAGAAAGACTATGCGGCAAGACTGCGTGAAACGAAGGCAATTTTACATAAGCTTGGAAGTGAGGAGGGTGCAATTGACAAAGTAAAGAAAAGGTGGTGGGGAAGAAGGAACAGTACGAGGTTTAATTGA 3519 0.4174 MSQTSGLFPAFQSFEALQPNVKFTTDPTLAFGEKHENDALGREVSEEVQDLAGDMDLFDEDSPYGERTTSLESRPSPGDDGAESASHPLPSISPSSNDHRWSDTTPYPSKKIHSWFQLPNGNWELGKIISTSGAESVITLPDGKVLRVKAESLVPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNRNMIYTKAGPVLVAVNPFKKVPLYGNDYIKAYKNKAMESPHVYAITDTAIREMRRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGASPSLREKLNLRSAEEYKYLRQSNCFSITGVNDAEEFRIVMEALDVVHVSKENQENVFAMLAAVLWLGNISFTVIDNENHVQPLEDEGLFNVAKLIGCDIGDLKLTLSTRKMKAGNDNIVQKLTLPQAIDARDALAKSIYACLFDWLVEQINNSLAVGKRRTGRSISILDIYGFESFERNSFEQFCINYANERLQQHFNRHLFKLEQEEYVQDGIDWAKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLRQHLNSNSCFQGERGKAFAVCHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCTCHLPKIFAAHMLLQSEKPVAGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNSQSPGSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLENVASQDPLSVSVAILHQFSILPEMYQVGFTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGHRARCYHKELKRGITTLQSFVRGEKTRKEFAASLQRHRAAVHIQKQMKGVFARNRMKNISDAAIVIQSAIRGSLARRCSGDMGLLKSIGMKANESDEVLVKASFLTELQRRVLKAEAALRVKKEENDILHQRLQQYESRWSEYESKMKSMEEGWQKQMRSLQSSLSIAKKSLAIDDSARNSDASVNASDERDYNSDIGSNHRRQESSSSVGNYHRRQESNGFRSMGAGFNVISGLANELEQRRQVFGDDAKFLVEVKSGQVEANLNPEQELRRLKHTFEAWKKDYAARLRETKAILHKLGSEEGAIDKVKKRWWGRRNSTRFN 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4843g00054 1172 SMART iq_5 835 857 IPR000048 GO:0005515
Pral4843g00054 1172 SMART iq_5 858 880 IPR000048 GO:0005515
Pral4843g00054 1172 SMART iq_5 907 929 IPR000048 GO:0005515
Pral4843g00054 1172 SMART iq_5 884 906 IPR000048 GO:0005515
Pral4843g00054 1172 SMART MYSc_2a 156 835 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pral4843g00054 1172 Gene3D - 838 886 - -
Pral4843g00054 1172 Gene3D - 887 928 - -
Pral4843g00054 1172 ProSiteProfiles IQ motif profile. 859 888 IPR000048 GO:0005515
Pral4843g00054 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 880 IPR027417 -
Pral4843g00054 1172 Pfam IQ calmodulin-binding motif 840 857 IPR000048 GO:0005515
Pral4843g00054 1172 Pfam IQ calmodulin-binding motif 861 879 IPR000048 GO:0005515
Pral4843g00054 1172 Pfam IQ calmodulin-binding motif 910 926 IPR000048 GO:0005515
Pral4843g00054 1172 CDD MYSc_Myo8 176 822 IPR036022 -
Pral4843g00054 1172 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 109 158 IPR004009 GO:0003774|GO:0005524|GO:0016459
Pral4843g00054 1172 ProSiteProfiles Myosin motor domain profile. 162 834 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pral4843g00054 1172 ProSiteProfiles IQ motif profile. 908 936 IPR000048 GO:0005515
Pral4843g00054 1172 PANTHER MYOSIN 155 1167 - -
Pral4843g00054 1172 MobiDBLite consensus disorder prediction 28 104 - -
Pral4843g00054 1172 MobiDBLite consensus disorder prediction 29 49 - -
Pral4843g00054 1172 Coils Coil 954 1002 - -
Pral4843g00054 1172 MobiDBLite consensus disorder prediction 1027 1063 - -
Pral4843g00054 1172 Gene3D Myosin VI head, motor domain, U50 subdomain 401 509 - -
Pral4843g00054 1172 Pfam Myosin head (motor domain) 164 822 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pral4843g00054 1172 Gene3D - 344 400 - -
Pral4843g00054 1172 FunFam Unconventional myosin-XIX 532 724 - -
Pral4843g00054 1172 ProSiteProfiles IQ motif profile. 885 911 IPR000048 GO:0005515
Pral4843g00054 1172 PRINTS Myosin heavy chain signature 573 601 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pral4843g00054 1172 PRINTS Myosin heavy chain signature 246 271 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pral4843g00054 1172 PRINTS Myosin heavy chain signature 520 548 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pral4843g00054 1172 PRINTS Myosin heavy chain signature 288 315 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pral4843g00054 1172 PRINTS Myosin heavy chain signature 192 211 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pral4843g00054 1172 MobiDBLite consensus disorder prediction 1027 1042 - -
Pral4843g00054 1172 FunFam Myosin heavy chain 344 400 - -
Pral4843g00054 1172 MobiDBLite consensus disorder prediction 1049 1063 - -
Pral4843g00054 1172 Gene3D Kinesin motor domain 161 767 IPR036961 -
Pral4843g00054 1172 Gene3D - 768 835 - -
Pral4843g00054 1172 Gene3D - 532 724 - -
Pral4843g00054 1172 MobiDBLite consensus disorder prediction 88 104 - -
Pral4843g00054 1172 ProSiteProfiles IQ motif profile. 838 865 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4843g00054 Pral-Chr4843 266442 278680 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4843g00054 10 1171 Myosins gene family AT1G50360 75.021 0.0 1780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4843g00054 - K10357 gmx:100801124 1921.75