Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4843g00046 ATGTCTTCCTTCCCTGGAAGCGATCATGACGGCGGAACAAAACCTTTTTTTTGCTACAAATGCGATCGCAGAGTCAATATTCCCGTCTCCGATTCGTCCGACCCCTTCTGTCCGTTCTGCTTTCAAGGCTTTCTTGAAGAAGTCGAAAACCCTAACCCTAACCCTTTTGGAGACCCAGAGCCCTCTTTTGGCTTTGATCCTTTGTCCTTTCTTCCCCTTCTCTTGTCCACTGCTTCTCGCACCAGGATTCGACCAGATTCTGTTGATTCTGACATATTCGACCCTGTTAATTTTCTCCAGAACCACCTTCGTGATCTTCAGGCTGATGGCGCGAACGTCCAATTCGAGTTCAATCATCCTTCTGAACAAGCGTTTCGGCTACCCACAAACATTGGCGATTACTTTCTTGGTCCTGGCCTGGAGCAATTGATACAGCAGCTCGCGGAGAACGACCCAAACCGTTATGGCACCCCACCTGCCTCGAAATATGCCGTGCAGAATCTTCCAGCTGTTACTGTCACTGATGAATTGTTGAACTCGGAAATGAACCAGTGTGCGGTATGTCAGGATGAGTTCGAGAAGGGCACCCAGGTAAAGCAAATGCCTTGCAAGCACGTGTACCATGACGGGTGCTTGCTTCCTTGGCTCGAACTGCATAACTCTTGCCCGGTATGTCGATATGAGTTGCCCACCGATGACCCCGATTATGAGAACCCAGCCCAAAGGGCTCAGGGGAATGCAAATGCCGGGTGGAGATCTGTTGGCAGTGCCAGCAGCAGCGGAGGGGGTAGCAGGCCTGTTCAGAGGACTTTTAGGATATCATTGCGGTATCCATTTGGCTCTCGTGAGTCTGCTCAGGAGAGCAGCGAACGAGGATGGGGAACTATGCAAGAAGATTTGGATTGA 906 0.5055 MSSFPGSDHDGGTKPFFCYKCDRRVNIPVSDSSDPFCPFCFQGFLEEVENPNPNPFGDPEPSFGFDPLSFLPLLLSTASRTRIRPDSVDSDIFDPVNFLQNHLRDLQADGANVQFEFNHPSEQAFRLPTNIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKYAVQNLPAVTVTDELLNSEMNQCAVCQDEFEKGTQVKQMPCKHVYHDGCLLPWLELHNSCPVCRYELPTDDPDYENPAQRAQGNANAGWRSVGSASSSGGGSRPVQRTFRISLRYPFGSRESAQESSERGWGTMQEDLD 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4843g00046 301 SUPERFAMILY RING/U-box 164 234 - -
Pral4843g00046 301 SMART ring_2 185 225 IPR001841 -
Pral4843g00046 301 Pfam Ring finger domain 183 226 IPR001841 -
Pral4843g00046 301 Pfam zinc-ribbon 16 47 IPR039525 GO:0061630
Pral4843g00046 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 91 230 - -
Pral4843g00046 301 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Pral4843g00046 301 MobiDBLite consensus disorder prediction 241 267 - -
Pral4843g00046 301 FunFam E3 ubiquitin-protein ligase RING1-like 146 232 - -
Pral4843g00046 301 MobiDBLite consensus disorder prediction 281 301 - -
Pral4843g00046 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Pral4843g00046 301 CDD RING-H2_RNF126-like 184 226 - -
Pral4843g00046 301 MobiDBLite consensus disorder prediction 236 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4843g00046 Pral-Chr4843 234537 238656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4843g00046 129 237 C3H Transcription Factor Family AT5G01980 48.624 1.88e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4843g00046 K11982 - gmx:100785289 355.91