Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4843g00016 ATGAAATTTGGCGAACTGTTTGACGCTGCTGTTGCTGGAGTCTCACCATCGAAGTCTGCCATGATTGGAAAGAGAGAAAGTGAAGATGAACCTGAGAAGCAAGTGACTGCAAAGAAGCAGAAGAGAGACTGGGATGCTGAAAATCAAAAGAAGGAAAGTAGTTCAGATGACTCCTTTTTAGATTCTGCAAACTCAGATGAAGATTCTGCTTTGAATGATTCCAACGTAGCCCCTGCTGAAGGTAAGAGTGGGCCCAGTGCTGTACGGAAGAAAGGCGAATCAAGATCAGATACCGGGAGTAGCTCAGTTGATAAAGATGATATAAAAATAGAAGCAACCATAGTGCGTGAGAAATTGCCTAATGCTGGTGAGAAAGAGCCTGCTAAGAAAGTTGATTCAAGCAAACCCTCAGGCTTAGATTCTGACAGCAAAACTAATGAGGATATGGACAATGTAACCACATCATCGAAGAAGTCGCTTGCTACTTCTGCTGCAGGTAATAATAAATCCACTCATAAGTTTGTGTCAAGCAATGACTCATCCCTGGATAGTGGCTTAGATGAGGATGATGTTCAGAAGACACGCGTAACGTCATCATCTAAGAAGCTGCTTGCTTCTGCAGTTGTTCAAAGGGAGGGAATTGGGAAAAATGAGAACCCCTGCTATGGATCAAGAGAAGGATTTGATGAGTGCAATGTTTCAGAAGGAAACGAAGAGATCGAGGAGAAACCTTGTACAACTCAGAAAGATGTGAAAGATGAAGAAATGGTTGATGTTACCTCAATGGGAGCAACTAGAAAGGGAGTTCCTAAAACAGCGTTGACTTTAGAAAAACAAAATGCCACATCGAAAAAGATATTTGTTGGGAACTTATCATTAGAGATGAAAAGGGCCAATTTGGAAAATCTATTTAAGGGTTGTGGAGAAATTGTTGATGTCTCGTTTGGTTTATATCGTGATGGGACTTTTAGAGGCTTTGCTCATGTTGAGTTTGCCACTGAAGAAGCTGCACAGAATGCCCTTATGTTGAATGGGAGTGAGCTGTTAAGACGTTTTGTCAGAATTGAGATAGCCCGTGAAAAGTTTGCATATACCCCTAATAGCAGGAACAACACATTGAAGGGTTTTCAAGCATTCTCTGGAGATGGTGAGCCTACAATGTTAGCTACTTCAAAAGAACAAAATGCCACATCAAAGATGCTATTTGTTGGAAACTTGTCATATAGCGTGGAAAGGGCGGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTGTTGATATTCGATTTGCTACAGACCGTGAAGGGAGGTTTAAAGGCTTCGCACACGTTTTGTTTGCCACAGAGGCAGCAGCACAAATTGCCCTTATGTTGAACGGGAAAGAACTGTTGAGACGTTCTCTCAGGCTTGATCTAGCTCATGAAAGGGGTGTATATTCCCACAGTAGCAACAACAGGAATGAATCATCCCAGGAGGATAAATCGTTAGGAGGGAATGAGGCTAAAATGCCAGCTGCTCCAAAAGAACAAAATGCCACATCAAAGACAGTATTTGTTGGAAACCTGTCGTATAGCGTGGAAAGGGCTGATTTGGAAAATTTGTTTAAAGATTGTGGAGAAATTATTGATATCCGTTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTCGGACATATTGAGTTTGCCACTTATGAAGCGGCACAAACTGCCCTTAAGTTGAATGGAAGCGAACTGTTGAGACAATATATAAGGCTTGATTTGGCTCATGAAAAGATTGTGCATTCTTTCAATAGCGGCATTCATGGGAACACGGAAAACTCTGGAAGTGTTGAGTCTCAAACAGTGTTTGTAAGGGGTTTTGATACATCTTTAAGAGAAGATGAGATAAGGACCAGTCTGGGAGAGCATTTCAGTTCTTGTGGACTAATTTCGAGGATATCAATTGCAAGAGATTATGACACTGGTTCTACTAAGGGGTATGCTTGGGTAGACTTCATGGACATTGATGGCTTAAACAAAGCACTAGAACTTGATGGAACTGAGGTTGGAGGTTATGTATTGTCAGTGGAGAAAAGAAGACCTCGGCGTTATATTCATGATGGTAGAGGTGGTGGTGATCAGTTAGGTGGATGGCGTGGTGGCGATCAATTTGGTGGATGGCGTGGTGGTGATCAATTTGGTGGGTGGCGTGGAGTTGGACAATGGGATCAGGGAAGAGGTTATGGCAGGAGGTGGCATTGA 2244 0.4207 MKFGELFDAAVAGVSPSKSAMIGKRESEDEPEKQVTAKKQKRDWDAENQKKESSSDDSFLDSANSDEDSALNDSNVAPAEGKSGPSAVRKKGESRSDTGSSSVDKDDIKIEATIVREKLPNAGEKEPAKKVDSSKPSGLDSDSKTNEDMDNVTTSSKKSLATSAAGNNKSTHKFVSSNDSSLDSGLDEDDVQKTRVTSSSKKLLASAVVQREGIGKNENPCYGSREGFDECNVSEGNEEIEEKPCTTQKDVKDEEMVDVTSMGATRKGVPKTALTLEKQNATSKKIFVGNLSLEMKRANLENLFKGCGEIVDVSFGLYRDGTFRGFAHVEFATEEAAQNALMLNGSELLRRFVRIEIAREKFAYTPNSRNNTLKGFQAFSGDGEPTMLATSKEQNATSKMLFVGNLSYSVERADLENLFKDCGEIVDIRFATDREGRFKGFAHVLFATEAAAQIALMLNGKELLRRSLRLDLAHERGVYSHSSNNRNESSQEDKSLGGNEAKMPAAPKEQNATSKTVFVGNLSYSVERADLENLFKDCGEIIDIRLATDREGRFKGFGHIEFATYEAAQTALKLNGSELLRQYIRLDLAHEKIVHSFNSGIHGNTENSGSVESQTVFVRGFDTSLREDEIRTSLGEHFSSCGLISRISIARDYDTGSTKGYAWVDFMDIDGLNKALELDGTEVGGYVLSVEKRRPRRYIHDGRGGGDQLGGWRGGDQFGGWRGGDQFGGWRGVGQWDQGRGYGRRWH 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4843g00016 747 MobiDBLite consensus disorder prediction 86 147 - -
Pral4843g00016 747 MobiDBLite consensus disorder prediction 479 510 - -
Pral4843g00016 747 SUPERFAMILY RNA-binding domain, RBD 610 724 IPR035979 GO:0003676
Pral4843g00016 747 MobiDBLite consensus disorder prediction 58 72 - -
Pral4843g00016 747 Gene3D - 602 743 IPR012677 -
Pral4843g00016 747 SUPERFAMILY RNA-binding domain, RBD 276 367 IPR035979 GO:0003676
Pral4843g00016 747 Gene3D - 479 596 IPR012677 -
Pral4843g00016 747 Gene3D - 369 478 IPR012677 -
Pral4843g00016 747 Gene3D - 225 368 IPR012677 -
Pral4843g00016 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 614 695 IPR000504 GO:0003723
Pral4843g00016 747 SUPERFAMILY RNA-binding domain, RBD 507 605 IPR035979 GO:0003676
Pral4843g00016 747 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 145 369 - -
Pral4843g00016 747 SMART rrm1_1 285 356 IPR000504 GO:0003723
Pral4843g00016 747 SMART rrm1_1 516 587 IPR000504 GO:0003723
Pral4843g00016 747 SMART rrm1_1 400 471 IPR000504 GO:0003723
Pral4843g00016 747 SMART rrm1_1 615 691 IPR000504 GO:0003723
Pral4843g00016 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 515 591 IPR000504 GO:0003723
Pral4843g00016 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 399 475 IPR000504 GO:0003723
Pral4843g00016 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 616 688 IPR000504 GO:0003723
Pral4843g00016 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 352 IPR000504 GO:0003723
Pral4843g00016 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 517 584 IPR000504 GO:0003723
Pral4843g00016 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 401 468 IPR000504 GO:0003723
Pral4843g00016 747 SUPERFAMILY RNA-binding domain, RBD 392 484 IPR035979 GO:0003676
Pral4843g00016 747 MobiDBLite consensus disorder prediction 148 182 - -
Pral4843g00016 747 MobiDBLite consensus disorder prediction 22 57 - -
Pral4843g00016 747 MobiDBLite consensus disorder prediction 479 496 - -
Pral4843g00016 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 360 IPR000504 GO:0003723
Pral4843g00016 747 MobiDBLite consensus disorder prediction 1 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4843g00016 Pral-Chr4843 62947 83534 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4843g00016 271 697 Eukaryotic Initiation Factors Gene Family AT1G22760 22.851 4.34e-15 77.4