Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4843g00014 ATGGGCGAGTCTGGCAAGAAATCAGATCTCGGTTTTGACGCTGCTGTTGCTGGAGTCTCACCATCGAAGTCTGCCATGATTGGAAAGAGAGAAAGTGAAGATGAACCTGAGAAGCAAGTGACTGCAAAGAAGCAGAAGAGAGACTGGGATGCTGAAAATCAAAAGAAGGAAAGTAGTTCAGATGACTCCTTTTTAGATTCTGCAAACTCAGATGAAGATTCTGCTTTGAATGATTCCAACGTAGCCCCTGCTGAAGGTAAGAGTGGGCCCAGTGCTGTACGGAAGAAAGGCGAATCAAGATCAGATACCGGGAGTAGCTCAGTTGATAAAGATGATATAAAAATAGAAGCAACCATAGTGCGTGAGAAATTGCCTAATGCTGGTGAGAAAGAGCCTGCTAAGAAAGTTGATTCAAGCAAACCCTCAGGCTTAGATTCTGACAGCAAAACTAATGAGGATATGGACAATGTAACCACATCATCGAAGAAGTCGCTTGCTACTTCTGCTGCAGGTAATAATAAATCCACTCATAAGTTTGTGTCAAGCAATGACTCATCCCTGGATAGTGGCTTAGATGAGGATGATGTTCAGAAGACACGCGTAACGTCATCATCTAAGAAGCTGCTTGCTTCTGCAGTTGTTCAAAGGGAGGGAATTGGGAAAAATGAGAACCCCTGCTATGGATCAAGAGAAGGATTTGATGAGTGCAATGTTTCAGAAGGAAACGAAGAGATCGAGGAGAAACCTTGTACAACTCAGAAAGATGTGAAAGATGAAGAAATGGTTGATGTTACCTCAATGGGAGCAACTAGAAAGGGAGTTCCTAAAACAGCGTTGACTTTAGAAAAACAAAATGCCACATCGAAAAAGATATTTGTTGGGAACTTATCATTAGAGATGAAAAGGGCCAATTTGGAAAATCTATTTAAGGGTTGTGGAGAAATTGTTGATGTCTCGTTTGGTTTATATCGTGATGGGACTTTTAGAGGCTTTGCTCATGTTGAGTTTGCCACTGAAGAAGCTGCACAGAATGCCCTTATGTTGAATGGGAGTGAGCTGTTAAGACGTTTTGTCAGAATTGAGATAGCCCGTGAAAAGTTTGCATATACCCCTAATAGCAGGAACAACACATTGAAGGGTTTTCAAGCATTCTCTGGAGATGGTGAGCCTACAATGTTAGCTACTTCAAAAGAACAAAATGCCACATCAAAGATGCTATTTGTTGGAAACTTGTCATATAGCGTGGAAAGGGCGGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTGTTGATATTCGATTTGCTACAGACCGTGAAGGGAGGTTTAAAGGCTTCGCACACGTTTTGTTTGCCACAGAGGCAGCAGCACAAATTGCCCTTATGTTGAACGGGAAAGAACTGTTGAGACGTTCTCTCAGGCTTGATCTAGCTCATGAAAGGGGTGTATATTCCCACAGTAGCAAGAATGAATCATCCCAGGAGGATAAATCGTTAGGAGGGAATGAGGCTAAAATGCCAGCTGCTCCAAAAGAACAAAATGCCACATCAAAGACAGTATTTGTTGGAAACCTGTCGTATAGCGTGGAAAGGGCTGATTTGGAAAATTTGTTTAAAGATTGTGGAGAAATTATTGATATCCGTTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTCGGACATATTGAGTTTGCCACTTATGAAGCGGCACAAACTGCCCTTAAGTTGAATGGAAGCGAACTGTTGAGACAATATATAAGGCTTGATTTGGCTCATGAAAAGATTGTGCATTCTTTCAATAGCGGCATTCATGGGAACACGGAAAACTCTGGAAGTGTTGAGTCTCAAACAGTGTTTGTAAGGGGTTTTGATACATCTTTAAGAGAAGATGAGATAAGGACCAGTCTGGGAGAGCATTTCAGTTCTTGTGGACTAATTTCGAGGATATCAATTGCAAGAGATTATGACACTGGTTCTACTAAGGGGTATGCTTGGGTAGACTTCATGGACATTGATGGCTTAAACAAAGCACTAGAACTTGATGGAACTGAGGTTGGAGGTTATGTATTGTCAGTGGAGAAAAGAAGACCTCGGCGTTATATTCATGATGGTAGAGGTGGTGGTGATCAGTTAGGTGGATGGCGTGGTGGCGATCAATTTGGTGGATGGCGTGGTGGTGATCAATTTGGTGGGTGGCGTGGAGTTGGACAATGGGATCAGGGAAGAGGTTATGGCAGGAGGTGGCATTGA 2253 0.4221 MGESGKKSDLGFDAAVAGVSPSKSAMIGKRESEDEPEKQVTAKKQKRDWDAENQKKESSSDDSFLDSANSDEDSALNDSNVAPAEGKSGPSAVRKKGESRSDTGSSSVDKDDIKIEATIVREKLPNAGEKEPAKKVDSSKPSGLDSDSKTNEDMDNVTTSSKKSLATSAAGNNKSTHKFVSSNDSSLDSGLDEDDVQKTRVTSSSKKLLASAVVQREGIGKNENPCYGSREGFDECNVSEGNEEIEEKPCTTQKDVKDEEMVDVTSMGATRKGVPKTALTLEKQNATSKKIFVGNLSLEMKRANLENLFKGCGEIVDVSFGLYRDGTFRGFAHVEFATEEAAQNALMLNGSELLRRFVRIEIAREKFAYTPNSRNNTLKGFQAFSGDGEPTMLATSKEQNATSKMLFVGNLSYSVERADLENLFKDCGEIVDIRFATDREGRFKGFAHVLFATEAAAQIALMLNGKELLRRSLRLDLAHERGVYSHSSKNESSQEDKSLGGNEAKMPAAPKEQNATSKTVFVGNLSYSVERADLENLFKDCGEIIDIRLATDREGRFKGFGHIEFATYEAAQTALKLNGSELLRQYIRLDLAHEKIVHSFNSGIHGNTENSGSVESQTVFVRGFDTSLREDEIRTSLGEHFSSCGLISRISIARDYDTGSTKGYAWVDFMDIDGLNKALELDGTEVGGYVLSVEKRRPRRYIHDGRGGGDQLGGWRGGDQFGGWRGGDQFGGWRGVGQWDQGRGYGRRWH 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4843g00014 750 MobiDBLite consensus disorder prediction 484 498 - -
Pral4843g00014 750 SUPERFAMILY RNA-binding domain, RBD 281 372 IPR035979 GO:0003676
Pral4843g00014 750 MobiDBLite consensus disorder prediction 27 62 - -
Pral4843g00014 750 SUPERFAMILY RNA-binding domain, RBD 397 485 IPR035979 GO:0003676
Pral4843g00014 750 Gene3D - 483 599 IPR012677 -
Pral4843g00014 750 Gene3D - 230 372 IPR012677 -
Pral4843g00014 750 Gene3D - 373 482 IPR012677 -
Pral4843g00014 750 Gene3D - 605 746 IPR012677 -
Pral4843g00014 750 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 518 594 IPR000504 GO:0003723
Pral4843g00014 750 MobiDBLite consensus disorder prediction 91 152 - -
Pral4843g00014 750 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 32 376 - -
Pral4843g00014 750 SUPERFAMILY RNA-binding domain, RBD 613 727 IPR035979 GO:0003676
Pral4843g00014 750 SMART rrm1_1 519 590 IPR000504 GO:0003723
Pral4843g00014 750 SMART rrm1_1 290 361 IPR000504 GO:0003723
Pral4843g00014 750 SMART rrm1_1 618 694 IPR000504 GO:0003723
Pral4843g00014 750 SMART rrm1_1 405 476 IPR000504 GO:0003723
Pral4843g00014 750 MobiDBLite consensus disorder prediction 484 513 - -
Pral4843g00014 750 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 365 IPR000504 GO:0003723
Pral4843g00014 750 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 617 698 IPR000504 GO:0003723
Pral4843g00014 750 MobiDBLite consensus disorder prediction 63 77 - -
Pral4843g00014 750 MobiDBLite consensus disorder prediction 153 187 - -
Pral4843g00014 750 SUPERFAMILY RNA-binding domain, RBD 510 608 IPR035979 GO:0003676
Pral4843g00014 750 MobiDBLite consensus disorder prediction 1 205 - -
Pral4843g00014 750 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 406 473 IPR000504 GO:0003723
Pral4843g00014 750 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 357 IPR000504 GO:0003723
Pral4843g00014 750 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 520 587 IPR000504 GO:0003723
Pral4843g00014 750 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 619 691 IPR000504 GO:0003723
Pral4843g00014 750 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 404 480 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4843g00014 Pral-Chr4843 62947 83535 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4843g00014 512 695 Eukaryotic Initiation Factors Gene Family AT1G49760 27.638 4.68e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4843g00014 - K11294 pcin:129311628 1112.06