Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4843g00013 ATGGGCGAGTCTGGCAAGAAATCAGATCTCGGTTTTGACGCTGCTGTTGCTGGAGTCTCACCATCGAAGTCTGCCATGATTGGAAAGAGAGAAAGTGAAGATGAACCTGAGAAGCAAGTGACTGCAAAGAAGCAGAAGAGAGACTGGGATGCTGAAAATCAAAAGAAGGAAAGTAGTTCAGATGACTCCTTTTTAGATTCTGCAAACTCAGATGAAGATTCTGCTTTGAATGATTCCAACGTAGCCCCTGCTGAAGGTAAGAGTGGGCCCAGTGCTGTACGGAAGAAAGGCGAATCAAGATCAGATACCGGGAGTAGCTCAGTTGATAAAGATGATATAAAAATAGAAGCAACCATAGTGCGTGAGAAATTGCCTAATGCTGGTGAGAAAGAGCCTGCTAAGAAAGTTGATTCAAGCAAACCCTCAGGCTTAGATTCTGACAGCAAAACTAATGAGGATATGGACAATGTAACCACATCATCGAAGAAGTCGCTTGCTACTTCTGCTGCAGGTAATAATAAATCCACTCATAAGTTTGTGTCAAGCAATGACTCATCCCTGGATAGTGGCTTAGATGAGGATGATGTTCAGAAGACACGCGTAACGTCATCATCTAAGAAGCTGCTTGCTTCTGCAGTTGTTCAAAGGGAGGGAATTGGGAAAAATGAGAACCCCTGCTATGGATCAAGAGAAGGATTTGATGAGTGCAATGTTTCAGAAGGAAACGAAGAGATCGAGGAGAAACCTTGTACAACTCAGAAAGATGTGAAAGATGAAGAAATGGTTGATGTTACCTCAATGGGAGCAACTAGAAAGGGAGTTCCTAAAACAGCGTTGACTTTAGAAAAACAAAATGCCACATCGAAAAAGATATTTGTTGGGAACTTATCATTAGAGATGAAAAGGGCCAATTTGGAAAATCTATTTAAGGGTTGTGGAGAAATTGTTGATGTCTCGTTTGGTTTATATCGTGATGGGACTTTTAGAGGCTTTGCTCATGTTGAGTTTGCCACTGAAGAAGCTGCACAGAATGCCCTTATGTTGAATGGGAGTGAGCTGTTAAGACGTTTTGTCAGAATTGAGATAGCCCGTGAAAAGTTTGCATATACCCCTAATAGCAGGAACAACACATTGAAGGGTTTTCAAGCATTCTCTGGAGATGGTGAGCCTACAATGTTAGCTACTTCAAAAGAACAAAATGCCACATCAAAGATGCTATTTGTTGGAAACTTGTCATATAGCGTGGAAAGGGCGGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTGTTGATATTCGATTTGCTACAGACCGTGAAGGGAGGTTTAAAGGCTTCGCACACGTTTTGTTTGCCACAGAGGCAGCAGCACAAATTGCTAAAATGCCAGCTGCTCCAAAAGAACAAAATGCCACATCAAAGACAGTATTTGTTGGAAACCTGTCGTATAGCGTGGAAAGGGCTGATTTGGAAAATTTGTTTAAAGATTGTGGAGAAATTATTGATATCCGTTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTCGGACATATTGAGTTTGCCACTTATGAAGCGGCACAAACTGCCCTTAAGTTGAATGGAAGCGAACTGTTGAGACAATATATAAGGCTTGATTTGGCTCATGAAAAGATTGTGCATTCTTTCAATAGCGGCATTCATGGGAACACGGAAAACTCTGGAAGTGTTGAGTCTCAAACAGTGTTTGTAAGGGGTTTTGATACATCTTTAAGAGAAGATGAGATAAGGACCAGTCTGGGAGAGCATTTCAGTTCTTGTGGACTAATTTCGAGGATATCAATTGCAAGAGATTATGACACTGGTTCTACTAAGGGGTATGCTTGGGTAGACTTCATGGACATTGATGGCTTAAACAAAGCACTAGAACTTGATGGAACTGAGGTTGGAGGTTATGTATTGTCAGTGGAGAAAAGAAGACCTCGGCGTTATATTCATGATGGTAGAGGTGGTGGTGATCAGTTAGGTGGATGGCGTGGTGGCGATCAATTTGGTGGATGGCGTGGTGGTGATCAATTTGGTGGGTGGCGTGGAGTTGGACAATGGGATCAGGGAAGAGGTTATGGCAGGAGGTGGCATTGA 2121 0.4201 MGESGKKSDLGFDAAVAGVSPSKSAMIGKRESEDEPEKQVTAKKQKRDWDAENQKKESSSDDSFLDSANSDEDSALNDSNVAPAEGKSGPSAVRKKGESRSDTGSSSVDKDDIKIEATIVREKLPNAGEKEPAKKVDSSKPSGLDSDSKTNEDMDNVTTSSKKSLATSAAGNNKSTHKFVSSNDSSLDSGLDEDDVQKTRVTSSSKKLLASAVVQREGIGKNENPCYGSREGFDECNVSEGNEEIEEKPCTTQKDVKDEEMVDVTSMGATRKGVPKTALTLEKQNATSKKIFVGNLSLEMKRANLENLFKGCGEIVDVSFGLYRDGTFRGFAHVEFATEEAAQNALMLNGSELLRRFVRIEIAREKFAYTPNSRNNTLKGFQAFSGDGEPTMLATSKEQNATSKMLFVGNLSYSVERADLENLFKDCGEIVDIRFATDREGRFKGFAHVLFATEAAAQIAKMPAAPKEQNATSKTVFVGNLSYSVERADLENLFKDCGEIIDIRLATDREGRFKGFGHIEFATYEAAQTALKLNGSELLRQYIRLDLAHEKIVHSFNSGIHGNTENSGSVESQTVFVRGFDTSLREDEIRTSLGEHFSSCGLISRISIARDYDTGSTKGYAWVDFMDIDGLNKALELDGTEVGGYVLSVEKRRPRRYIHDGRGGGDQLGGWRGGDQFGGWRGGDQFGGWRGVGQWDQGRGYGRRWH 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4843g00013 706 SMART rrm1_1 574 650 IPR000504 GO:0003723
Pral4843g00013 706 SMART rrm1_1 405 474 IPR000504 GO:0003723
Pral4843g00013 706 SMART rrm1_1 290 361 IPR000504 GO:0003723
Pral4843g00013 706 SMART rrm1_1 475 546 IPR000504 GO:0003723
Pral4843g00013 706 Gene3D - 557 702 IPR012677 -
Pral4843g00013 706 MobiDBLite consensus disorder prediction 27 62 - -
Pral4843g00013 706 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 474 550 IPR000504 GO:0003723
Pral4843g00013 706 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 150 376 - -
Pral4843g00013 706 SUPERFAMILY RNA-binding domain, RBD 466 563 IPR035979 GO:0003676
Pral4843g00013 706 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 573 654 IPR000504 GO:0003723
Pral4843g00013 706 MobiDBLite consensus disorder prediction 91 152 - -
Pral4843g00013 706 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 476 543 IPR000504 GO:0003723
Pral4843g00013 706 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 357 IPR000504 GO:0003723
Pral4843g00013 706 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 406 460 IPR000504 GO:0003723
Pral4843g00013 706 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 575 647 IPR000504 GO:0003723
Pral4843g00013 706 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 365 IPR000504 GO:0003723
Pral4843g00013 706 MobiDBLite consensus disorder prediction 153 187 - -
Pral4843g00013 706 MobiDBLite consensus disorder prediction 63 77 - -
Pral4843g00013 706 Gene3D - 233 374 IPR012677 -
Pral4843g00013 706 Gene3D - 463 555 IPR012677 -
Pral4843g00013 706 Gene3D - 375 462 IPR012677 -
Pral4843g00013 706 SUPERFAMILY RNA-binding domain, RBD 569 683 IPR035979 GO:0003676
Pral4843g00013 706 SUPERFAMILY RNA-binding domain, RBD 281 372 IPR035979 GO:0003676
Pral4843g00013 706 SUPERFAMILY RNA-binding domain, RBD 397 461 IPR035979 GO:0003676
Pral4843g00013 706 MobiDBLite consensus disorder prediction 1 205 - -
Pral4843g00013 706 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 404 490 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4843g00013 Pral-Chr4843 62947 83535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4843g00013 277 656 Eukaryotic Initiation Factors Gene Family AT1G22760 22.782 1.61e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4843g00013 K11294 - pcin:129311628 1028.85