Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4843g00005 ATGTACTTGAGGAGAATACAATGTCGAGATTGGAGGTGGGGCGTTTCACTTCAGCCACTCAAATACTTAATTAGGCCAAGACGCTATGGTCATGCATGCTTTCAATCTCTGTGCCCTAAGACTACCGTGGAAGAATGTGTTTCACATGATATTATAGTAAAGAGACGTCTATTGGAATCTTTTTTATCTAGGGTCGGATCATCTAATAGGAGTTGTACTGATCTGAACAGAAGGCCTAGTTCATATTTGAGAAGTACTCAGTTACGCTTCTACAGTTCTGAAAGTGATGGAAGGAATGCTAGTGAGGGCAACCATGTAAACGCAAATGATGGAGCTCGCTGTGATAAGCAAAAGAACTGGCAAGATAAGTTTGGGGAAGATGCCAAACTCTGTAATGCTCATGCTCAACTTGGGAAACATGATCAAGAGGAGTGGCTCAAGAATGAGAAGATTGCCATTGAAAATAAAAAGAGAGAATCACCCTTTTTAACCAGAAAGGATAAGTTCAAAAATGAGTTTCTGAGAAGGGTTGTTCCTTGGGAGAAAATAAACATTTCATGGGACACATTTCCTTACTATATTCATGAGAATACCAAAAATCTTCTCTTGGAATGTGCCGCTTCCCATTTGAGACATAATAAGGTTGCTTCTTCTTATGGGACTCGCCTCTCATCTTCAAGTGGGAGAATATTGCTTCAGAGCGTGCCTGGTACTGAGCTATATCGAGAGAGATTAGTTAGAGCACTTGCACAAGATCTAAAAGTCCCCCTACTGGTGCTTGATAGCAATATCCTTGCTCCTTATTATATCGATGATGACATATCTTCATCAGAATGCGAGTCTGATGATGATAATGCAGAATCTGGGGAGGAGGCTTCTCTGGAGTCCGAGAATGAAGATGATAACAACGAAGAAGAGTGGACTAGTAGTGCTGAGGCAAAGTCAGATGCCAGTGATAACGAAGAACATGATGCGATAGCAACTGCTGAAGCAGCCCTAAAGAAGAGGTCATCTGAAGAGTCAGAAAATTCTGAGTCAACCAAATCTGAAGTTGTGAAGCCTTCTGACCCATCTGGATGCCAATTGAAGAAAGGTGACCGTGTGAAATACATTGGGCCATCTGTTCAAATGAAAGTCAACAATAGCAGGATCATACTGGGGAAGATAATGACATCTGATGGCCCAACTAATGCTTACACTAACATCCATGGCAGATCTTTGTCCAATGGTCAACGGGGAGAGGTATATGAGGTGGAGGGGGATCAAGCTGCTGTCATCATGGACATTAGCGAAGATGATACAAAGGAGGGAGAGTTGGAGAAATCTAATGAACATACGGATTCACGACTTTGTTGGATACATGTTAAGGACATTGAGCATGACCCTGATGCTCAAGTACAGGATTGCTACATAGCTATGGAGGCTCTATGCGAGGTTTTGGATTCCAAACAACCTCTTATTGTCTATTTTCCAGACAGTACACAGTGGTTTCATAAATCAATCCTGAAGTCAAACAGAAAAGAGTTCTTTCGTAAGGTTCAAGAAATGTTTGACAAGTTGTCTGGTCCAGTTGTGTTGATTTGTGGACAAAACAAAATTCAATCAGGGTCAAAAGAGAAAAAGCAATTTACAATGATACTTCCAAACTTTGGACGCGTTGGTAAGCTGCCTCTTTCTCTGAAACACTTGACTGAGGGACTTGGAGCAACAAAGAGATCGGATGATGATGAACTCCACAAGCTTTTCACTAATGTTTTGTGCATACATCCGCCTAAAGAGGACGATCAGCTTGGAACTTTTAAAAAACAACTTGAGGAAGACAGGAAAATTGTGATTTCACGTAGTAGTTTGAATGAATTACACAAGGTTCTTGAAGAACATGAGCTATCATGCTTGGACCTCTTGCAAGTAAATACTGATGGTGTTATTCTGACAAAGCAAAAGGCTGAAAAGGTGGTGGGATGGGCAAAAAATAATTACTTGTCATCTTGCCCACTTCCATATGTTAAAGGAGAACGATTGTGCTTGCCTCGTGAAAGTCTTGAAATTGCAATCTCAAGATTGAGGGATCAAGAAACCATGTCACGGAAGCCCTCTCAGGGTCTGAAGAACCTTGCAAAGGATGAGTATGAGAGCAACTTCATTTCGGCTGTAGTACCTCCTGGTGAAATTGGGGTGCAGTTTGATGACATAGGTGCTCTTGAAGATGTGAAGATGGCACTTAATGAACTTGTCATCCTTCCGATGAGGAGGCCAGAGCTTTTCTCTCGTGGAAACTTGTTGCGGCCTTGCAAAGGAATACTACTTTTTGGTCCTCCTGGTACGGGGAAAACACTTCTGGCCAAGGCACTTGCAACAGAAGCAGGCGCAAATTTTATCAGCATAACTGGTTCTACTCTAACATCAAAGTGGTTTGGAGATGCTGAGAAACTTACCAAGGCCCTTTTCTCCTTTGCTAGCAAGCTTGCTCCTGTCATTATATTTGTTGATGAAGTTGATAGTTTGCTTGGTGCTCGAGGGGGTGCTTTTGAGCATGAAGCCACTAGAAGAATGAGGAATGAGTTCATGGCGGCTTGGGATGGATTGAGGACAAAAGAGAGTCAAAGAATTCTCATTCTTGGTGCAACAAACAGGCCTTTTGATCTTGATGATGCTGTTATACGCCGCTTACCAAGAAGGATATATGTGGATTTGCCAGATGCTGAAAATCGGATGAAGATCTTAAGAATCTTTCTTGCACAAGAAAATCTTGATCATGATTTTCACTTTGACAAACTTGCTAACTTAACTGAGGGATACTCTGGCAGTGATTTGAAGAACCTTTGCATTGCTGCGGCATATAGACCTGTTCAAGAGCTGCTAGAGAACGAAAAGAAGGCGAGCTCCAGTGGTCCAACATCCGTATTAAGGCCTCTAAAATTGGATGATTTTATTCAGGCAAAATCAAAGGTTGGCCCATCAGTTGCCTATGATGCGGCAAGCATGAATGAGTTGAGGAAGTGGAATGAAATGTACGGAGAAGGTGGAAGCAGGACAAAATCTCCATTTGGATTTTGA 3057 0.42 MYLRRIQCRDWRWGVSLQPLKYLIRPRRYGHACFQSLCPKTTVEECVSHDIIVKRRLLESFLSRVGSSNRSCTDLNRRPSSYLRSTQLRFYSSESDGRNASEGNHVNANDGARCDKQKNWQDKFGEDAKLCNAHAQLGKHDQEEWLKNEKIAIENKKRESPFLTRKDKFKNEFLRRVVPWEKINISWDTFPYYIHENTKNLLLECAASHLRHNKVASSYGTRLSSSSGRILLQSVPGTELYRERLVRALAQDLKVPLLVLDSNILAPYYIDDDISSSECESDDDNAESGEEASLESENEDDNNEEEWTSSAEAKSDASDNEEHDAIATAEAALKKRSSEESENSESTKSEVVKPSDPSGCQLKKGDRVKYIGPSVQMKVNNSRIILGKIMTSDGPTNAYTNIHGRSLSNGQRGEVYEVEGDQAAVIMDISEDDTKEGELEKSNEHTDSRLCWIHVKDIEHDPDAQVQDCYIAMEALCEVLDSKQPLIVYFPDSTQWFHKSILKSNRKEFFRKVQEMFDKLSGPVVLICGQNKIQSGSKEKKQFTMILPNFGRVGKLPLSLKHLTEGLGATKRSDDDELHKLFTNVLCIHPPKEDDQLGTFKKQLEEDRKIVISRSSLNELHKVLEEHELSCLDLLQVNTDGVILTKQKAEKVVGWAKNNYLSSCPLPYVKGERLCLPRESLEIAISRLRDQETMSRKPSQGLKNLAKDEYESNFISAVVPPGEIGVQFDDIGALEDVKMALNELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRTKESQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAQENLDHDFHFDKLANLTEGYSGSDLKNLCIAAAYRPVQELLENEKKASSSGPTSVLRPLKLDDFIQAKSKVGPSVAYDAASMNELRKWNEMYGEGGSRTKSPFGF 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4843g00005 1018 ProSitePatterns AAA-protein family signature. 870 889 IPR003960 GO:0005524|GO:0016887
Pral4843g00005 1018 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 168 1013 - -
Pral4843g00005 1018 Gene3D - 899 984 - -
Pral4843g00005 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 726 947 IPR027417 -
Pral4843g00005 1018 SMART AAA_5 763 900 IPR003593 GO:0016887
Pral4843g00005 1018 Pfam ATPase family associated with various cellular activities (AAA) 767 897 IPR003959 GO:0005524|GO:0016887
Pral4843g00005 1018 Gene3D - 726 1002 IPR027417 -
Pral4843g00005 1018 MobiDBLite consensus disorder prediction 93 113 - -
Pral4843g00005 1018 MobiDBLite consensus disorder prediction 275 367 - -
Pral4843g00005 1018 MobiDBLite consensus disorder prediction 307 349 - -
Pral4843g00005 1018 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 725 901 - -
Pral4843g00005 1018 Pfam AAA+ lid domain 921 955 IPR041569 -
Pral4843g00005 1018 MobiDBLite consensus disorder prediction 275 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4843g00005 Pral-Chr4843 46000 58818 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4843g00005 761 961 Calmodulin-binding Proteins AT3G56690 35.096 5.34e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4843g00005 - - gmx:100802939 1489.17