Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4840g00054 ATGGTGGACGGGGAACCCGTTTCAAAATCCTGCAAGTTCAATGAAGAAGAGGAAGGCGACAAAAGACCTCTACTCCTTCAATGCGCAGAACTCATCCTCCCATGGCTAACCCCTTTGGAGCTTGCCAATGTCTCTTTGACCTGCAAAGCCTTTTCCTTTATTTCCAAGACCATCATCCTCCGCCGCGTATCTGATTCGTCAAGAGGGTTCGAGAATTTGCCTATAACATTTCGCAACACCGTTGATGATACGCCATACTCTTTCTTCATCTACACTCCTTCCCTAATTCTACCTTCTGATTCGCAATTTCTTCGTCAATCCTGGGGTTCGAATTTTGCTGCCACCCGTGACTGGTTTGGTAAGCTTGCTATGGAATCAGTGAGGTTAGTTGATGAAGAGGGTCAGAGTGTATCCGGATGTGACTGTGACACTTGTGGGGATGCTGGGGATGAAGACGACAGGTGTCCTTGTTCGAGGTTGGCTGGGTTGGATGTGGCCAACGAGTGCGGACCGCGTTGTAAGTGCGGGATGCAGTGTGGAAATCGGTTGAGTCAGAAGGGGATTTCAGTTCGGTTGAAAATCGTGAGGGATAGGAGGAAAGGATGGGGTTTGTTCGCTGACCAATTGATACGGAAAGGCCAGTTCGTATGTGAATATGCAGGTGAACTCTTGACAACCAAGGAAGCGAGGAGGAGACATCGGTGTTATGATGAGCTTTCATCACGAGGTCAGTTTTCTTCTGCTCTTTTGGTTGTGAGGGAGCATCTGCCATCTGGAAGGGCTTGTCTGAGGATGAATATTGATGCCACAAGAATAGGAAATGTGGCACGGTTCATTAATCATTCTTGTGATGGTGGTAATTTAAGCACAAAACTAGTGAGAAGGTCGGGAGCTTTATTTCCTCGACTTTGTTTCTTTGCTGTAGAAGATATAGAAAAAGATGTAGAGCTTACTTTTAGCTATGGAGAAATCAGGACAAGGCCTATGGGTTTGCCATGTTTTTGTGGTAGCTCTTCTTGCTTTGGAACATTGCCCTCAGAAGACACTTAA 1050 0.4638 MVDGEPVSKSCKFNEEEEGDKRPLLLQCAELILPWLTPLELANVSLTCKAFSFISKTIILRRVSDSSRGFENLPITFRNTVDDTPYSFFIYTPSLILPSDSQFLRQSWGSNFAATRDWFGKLAMESVRLVDEEGQSVSGCDCDTCGDAGDEDDRCPCSRLAGLDVANECGPRCKCGMQCGNRLSQKGISVRLKIVRDRRKGWGLFADQLIRKGQFVCEYAGELLTTKEARRRHRCYDELSSRGQFSSALLVVREHLPSGRACLRMNIDATRIGNVARFINHSCDGGNLSTKLVRRSGALFPRLCFFAVEDIEKDVELTFSYGEIRTRPMGLPCFCGSSSCFGTLPSEDT 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4840g00054 349 Pfam Pre-SET motif 67 182 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral4840g00054 349 ProSiteProfiles Post-SET domain profile. 329 345 IPR003616 -
Pral4840g00054 349 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 48 339 - -
Pral4840g00054 349 ProSiteProfiles SET domain profile. 190 322 IPR001214 GO:0005515
Pral4840g00054 349 SUPERFAMILY SET domain 72 342 IPR046341 -
Pral4840g00054 349 Gene3D SET domain 50 327 IPR046341 -
Pral4840g00054 349 SMART set_7 190 328 IPR001214 GO:0005515
Pral4840g00054 349 Pfam SET domain 201 322 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4840g00054 Pral-Chr4840 272740 274483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4840g00054 63 344 Su(var)3-9 homologs AT1G73100 29.874 4.76e-25 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral4840g00054 SET 3.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4840g00054 K11433 - qsa:O6P43_009907 471.085