Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4840g00052 ATGAATTCGCCGGGGAGGAATAGGAGCATTTTGGTCTTGCCCACTAGCTCCCGCTCGGTGACCGAGACCGTCAATGGTTCGCATAACTTTGTAATCAAGGGCTACTCTCTCGCCAAAGGTATCGGCGTTGGTAAGCACATAGCTAGCGAGAATTTCACTGTCGGAGGTTTCCAGTGGGCCATTTATTTCTATCCGGACGGGAAGAATCCCGAGGATAATTCCACGTACGTTTCGGTGTTCATTGCGCTTGCGAGCGAGGGTACTGATGTGCGAGCACTGTTTGAGCTGACATTGGTGGACCAGAGTGGCAATGGAAAGCACAAAGTTCATAGCCACTTCGATCGATCGCTTGAAAGTGGGCCTTATACGCTCAAGTACAGGGGCAGCATGTGGGGCTATAAGCGTTTTTTCAAACGAGCTCAGCTGGAGGCGTCGACCTTCCTTAAAGATGACTGCTTGAAGATAAATTGTACTGTTGGTGTTGTGGTTTCATCCATAGATTGTTCAAAATTAAACAAAGTACATGTCCCTGAGTCTGATATTGGTTCACATTTTGGCATGCTATTAGAAAATGAGGAAGGATCAGACATTACATTCTCTGTTTCTGGGGAAAAGTTTCATGCACACAAGCTTGTATTGGCTGCTCGTTCTACTAAATTTGAGACAGAATTTTTCAATAAGATGGAGGAAGATGATCATGAAGTTGTTATTACTGATATGGAACCTAAGGTTTTCCGGGCACTGCTTCATTTTATTTATAAAGATACTCTTATAGAAGATGAAGAGCTCTTCATGTCATATTCTTCACTCTCATCAGTATCTGACACATTTGCTGCAAAGTTGTTAGCTGCTGCAGAAAAGTATGGCTTGCCAAGACTCAAACTGTTGTGTGAGTCCATACTTTGCAAAGACATTTCTATAAGTTCTGTTGCATGTATTTTGGCCCTTGCTGATCAATATCATGCCACAGAACTGAAGTCCATTTGTCTAAAATTTGCTGCTGAGAACCTTGTTGCTGTGATGCAATCTGATAGTTTCGAGTATCTTAAGGAGAACTGTCCATTGTTGCAATCAGAACTGCTAAAGACAGTGGCAGGGTGCGAAGATGAATTTAGTGGAGAGGGAAAATGTAGTGTGTGGGCCCAGTTTTCTGATGGCTGTGATACAAATGGAGTCGAACGAAGTCAAAATTTATGGGTTCAGCTTTCTGATGGTGTTAACAATAACAATAGGAGTCCAGGTGAAGAAGCTTCATGA 1257 0.4304 MNSPGRNRSILVLPTSSRSVTETVNGSHNFVIKGYSLAKGIGVGKHIASENFTVGGFQWAIYFYPDGKNPEDNSTYVSVFIALASEGTDVRALFELTLVDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNKVHVPESDIGSHFGMLLENEEGSDITFSVSGEKFHAHKLVLAARSTKFETEFFNKMEEDDHEVVITDMEPKVFRALLHFIYKDTLIEDEELFMSYSSLSSVSDTFAAKLLAAAEKYGLPRLKLLCESILCKDISISSVACILALADQYHATELKSICLKFAAENLVAVMQSDSFEYLKENCPLLQSELLKTVAGCEDEFSGEGKCSVWAQFSDGCDTNGVERSQNLWVQLSDGVNNNNRSPGEEAS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4840g00052 418 SMART BTB_4 195 305 IPR000210 GO:0005515
Pral4840g00052 418 CDD BTB_POZ_BPM_plant 181 302 - -
Pral4840g00052 418 SUPERFAMILY POZ domain 174 303 IPR011333 -
Pral4840g00052 418 CDD MATH 26 159 IPR002083 GO:0005515
Pral4840g00052 418 FunFam BTB/POZ and MATH domain-containing protein 4 24 163 - -
Pral4840g00052 418 ProSiteProfiles BTB domain profile. 195 261 IPR000210 GO:0005515
Pral4840g00052 418 ProSiteProfiles MATH/TRAF domain profile. 25 159 IPR002083 GO:0005515
Pral4840g00052 418 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 17 361 IPR045005 GO:0016567
Pral4840g00052 418 Pfam BTB/POZ domain 187 304 IPR000210 GO:0005515
Pral4840g00052 418 SUPERFAMILY TRAF domain-like 22 161 - -
Pral4840g00052 418 FunFam BTB-POZ and math domain 1 171 299 - -
Pral4840g00052 418 SMART math_3 30 142 IPR002083 GO:0005515
Pral4840g00052 418 CDD BACK_AtBPM-like 302 363 IPR034090 -
Pral4840g00052 418 Gene3D - 304 376 - -
Pral4840g00052 418 Gene3D Potassium Channel Kv1.1; Chain A 171 299 IPR011333 -
Pral4840g00052 418 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 24 163 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4840g00052 Pral-Chr4840 262454 266435 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pral4840g00052 BTB 1.7e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4840g00052 K10523 - gmx:100818306 714.916