Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4840g00043 ATGATATACTGTGATCACTGTCAAAAATTTGTACACGGAATGCGACCGGATGAGGCTTCATTATGTTGTGAAGCATGTGGGAAGGTTTTGGAAGACATGTATTTTTCTCAAGAGCCCACTTTCATTAAAGATGCATCTGGGCAGAGTAAACTATCAGGTAATTATGTGAAAACAATCCAAAGCGGGTATTCGGCTTCCCGTAAAAGAACATTAGATAGAGCATTTGATGACATAAGATACCTAAGCCAAAACCTTGGAGTGGAAGATGTCAGGTTGTCAACACAAGCATTGACCTTTTATAAAATAGCAATGGAACGGAATTTCACAAAGGGACGAAAATCAGAGCAAGTACAGGCTGCTTGTCTCTACATTGCATTCCGTGCAGAAGATAAGCCATACCTTCTCATTGATTTTTCAAATTATTTAAGGACAAATGTCTATGTTCTAGGTGCAGTTTTTTTACAGCTTTGTAAAGTATTGAGGCTTGAAGAGCACCCAATTGTTCAAAAACCCGTTGATCCTAGTCTTTTTATTTTTAAATATACAAGGAATTTATTAAATCAAAGGAATATCATCGTCACTGAAACTGCACTGAGCATTATTGCAAGCATGAAACGTGATTGGATGCAGACAGGGAGGAAGCCTAGTGGTTTATGTGGTGCGGCATTGTATATAGCTGCCCTTGCACATGGTTTTAAATACTCAAAGTCTGACATCCTAAGAATTGTCCATGTATGTGAAGCAACATTGACCAAGCGTTTGGTTGAGTTTGAGAATACAACCTCTGCTAGCTTGACAGTTGGGGAATTGAAGATGATGGCAAAAGAACGTGAAAAAATTCCTATAGAGAAACCAAATTGTGGATCAGAGGAACATGTCTCAAAGGATCTACTGTGTGAACACAAGGATAGTGGTGTCCCACATTGGGCCCACGGATTATGTGAAAGATGTTATGAGGATTTTGTTAAACTCTCTGGTGGACTTGATGGCGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGACAGAATGACAAAATCACCTTGTGAGGAAAGTGGCACCCAATCAAGTGATTTGGCAAAAGCATCAAATGGTATGTGTGCAGGCAGGAAAGAAGATTTGTCTGCTCCTGGGCCAGAAAGTGTTGTAGCGGATGTTGAGGAAATGGCTACTAAAGATGGCGGAAATGATGAATCAAATGGAGAAGATATGAGTGCTAAAACTCCCAGTGAATCAGAAAGTCTCTCAGATATTGATGATTTGGAGGTTGAAGGCTACCTTCACAATGAGGAGGAGAAGCATTACAAGACGCTTATATGGAGTGAAATGAATAGGGAGTATCTTGAGGAGCAAGCAGCCAAGGAGGAAGCAGCAGCTGCTGCTAAGGAAGCTTTCGAGGCAAATTTTCACTGTTCGGAGGATATGCTAGCAGCGAAAGAGCTTGCTGAATCTGCTGCTGCAGCTGTGGCCAAATCCAGAAAGGAAAAGAAGCAGAGACGAGCCCAGGAGGCAAAAAACTCAGGTCCTGCTCAATCTGCTGCTGAGGCTACTCGGAAAATGTTGATAAATAAGAGGCTCAGCTCCAAAGTCAATCTTGATCGCTTGGATAATTTATTTGATGATATTGAGGCGTCAGTGAACAAGAAGGTACGATTTGAGCTGCACTCCCATAAAGGTGGTAAACTAGAGCCTGAGCCAGAGGACAAAGACAAAGGTGATGATATGGGATCCGTTGATAAATTTGAGTACGGAGGTTATATGGGCAAGGAAAATAATTTGCAGGAAGAAAAACTGGCGGAGTATGATTGTGGAGATGATGATTATAGCTATGATGATGATGACTAA 1848 0.4161 MIYCDHCQKFVHGMRPDEASLCCEACGKVLEDMYFSQEPTFIKDASGQSKLSGNYVKTIQSGYSASRKRTLDRAFDDIRYLSQNLGVEDVRLSTQALTFYKIAMERNFTKGRKSEQVQAACLYIAFRAEDKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIFKYTRNLLNQRNIIVTETALSIIASMKRDWMQTGRKPSGLCGAALYIAALAHGFKYSKSDILRIVHVCEATLTKRLVEFENTTSASLTVGELKMMAKEREKIPIEKPNCGSEEHVSKDLLCEHKDSGVPHWAHGLCERCYEDFVKLSGGLDGGLDPPAFQRAERDRMTKSPCEESGTQSSDLAKASNGMCAGRKEDLSAPGPESVVADVEEMATKDGGNDESNGEDMSAKTPSESESLSDIDDLEVEGYLHNEEEKHYKTLIWSEMNREYLEEQAAKEEAAAAAKEAFEANFHCSEDMLAAKELAESAAAAVAKSRKEKKQRRAQEAKNSGPAQSAAEATRKMLINKRLSSKVNLDRLDNLFDDIEASVNKKVRFELHSHKGGKLEPEPEDKDKGDDMGSVDKFEYGGYMGKENNLQEEKLAEYDCGDDDYSYDDDD 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4840g00043 615 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Pral4840g00043 615 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Pral4840g00043 615 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Pral4840g00043 615 MobiDBLite consensus disorder prediction 554 579 - -
Pral4840g00043 615 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Pral4840g00043 615 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Pral4840g00043 615 Gene3D Single helix bin 408 459 - -
Pral4840g00043 615 SUPERFAMILY Cyclin-like 74 163 IPR036915 -
Pral4840g00043 615 SMART cyclin_7 76 158 IPR013763 -
Pral4840g00043 615 SMART cyclin_7 176 259 IPR013763 -
Pral4840g00043 615 MobiDBLite consensus disorder prediction 488 517 - -
Pral4840g00043 615 Coils Coil 445 465 - -
Pral4840g00043 615 MobiDBLite consensus disorder prediction 490 504 - -
Pral4840g00043 615 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 531 IPR000812 GO:0006352|GO:0070897
Pral4840g00043 615 FunFam Transcription factor IIIB subunit 173 262 - -
Pral4840g00043 615 MobiDBLite consensus disorder prediction 332 362 - -
Pral4840g00043 615 SUPERFAMILY Cyclin-like 172 264 IPR036915 -
Pral4840g00043 615 Coils Coil 488 508 - -
Pral4840g00043 615 Gene3D - 62 165 - -
Pral4840g00043 615 MobiDBLite consensus disorder prediction 601 615 - -
Pral4840g00043 615 Pfam Brf1-like TBP-binding domain 417 541 IPR011665 -
Pral4840g00043 615 MobiDBLite consensus disorder prediction 554 615 - -
Pral4840g00043 615 Gene3D - 173 267 - -
Pral4840g00043 615 MobiDBLite consensus disorder prediction 392 417 - -
Pral4840g00043 615 Pfam Transcription factor TFIIB repeat 170 259 IPR013150 GO:0017025
Pral4840g00043 615 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Pral4840g00043 615 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4840g00043 Pral-Chr4840 209771 224294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4840g00043 1 522 Inorganic Solute Cotransporters AT2G01280 42.424 2.31e-114 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4840g00043 K15196 - gmx:100817609 677.937