Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4840g00042 ATGATATACTGTGATCACTGTCAAAAATTTGTACACGGAATGCGACCGGATGAGGCTTCATTATGTTGTGAAGCATGTGGGAAGGTTTTGGAAGACATGTATTTTTCTCAAGAGCCCACTTTCATTAAAGATGCATCTGGGCAGAGTAAACTATCAGGTAATTATGTGAAAACAATCCAAAGCGGGTATTCGGCTTCCCGTAAAAGAACATTAGATAGAGCATTTGATGACATAAGATACCTAAGCCAAAACCTTGGAGTGGAAGATGTCAGGTTGTCAACACAAGCATTGACCTTTTATAAAATAGCAATGGAACGGAATTTCACAAAGGGACGAAAATCAGAGCAAGTACAGGCTGCTTGTCTCTACATTGCATTCCGTGCAGAAGATAAGCCATACCTTCTCATTGATTTTTCAAATTATTTAAGGACAAATGTCTATGTTCTAGGTGCAGTTTTTTTACAGCTTTGTAAAGTATTGAGGCTTGAAGAGCACCCAATTGTTCAAAAACCCGTTGATCCTAGTCTTTTTATTTTTAAATATACAAGGAATTTATTAAATCAAAGGAATATCATCGTCACTGAAACTGCACTGAGCATTATTGCAAGCATGAAACGTGATTGGATGCAGACAGGGAGGAAGCCTAGTGGTTTATGTGGTGCGGCATTGTATATAGCTGCCCTTGCACATGGTTTTAAATACTCAAAGTCTGACATCCTAAGAATTGTCCATGTATGTGAAGCAACATTGACCAAGCGTTTGGTTGAGTTTGAGAATACAACCTCTGCTAGCTTGACAGTTGGGGAATTGAAGATGATGGCAAAAGAACGTGAAAAAATTCCTATAGAGAAACCAAATTGTGGATCAGAGGAACATGTCTCAAAGGATCTACTGTGTGAACACAAGGATAGTGGTGTCCCACATTGGGCCCACGGATTATGTGAAAGATGTTATGAGGATTTTGTTAAACTCTCTGGTGGACTTGATGGCGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGACAGAATGACAAAATCACCTTGTGAGGAAAGTGGCACCCAATCAAGTGATTTGGCAAAAGCATCAAATGGTATGTGTGCAGGCAGGAAAGAAGATTTGTCTGCTCCTGGGCCAGAAAGTGTTGCGGATGTTGAGGAAATGGCTACTAAAGATGGCGGAAATGATGAATCAAATGGAGAAGATATGAGTGCTAAAACTCCCAGTGAATCAGAAAGTCTCTCAGATATTGATGATTTGGAGGTTGAAGGCTACCTTCACAATGAGGAGGAGAAGCATTACAAGACGCTTATATGGAGTGAAATGAATAGGGAGTATCTTGAGGAGCAAGCAGCCAAGGAGGAAGCAGCAGCTGCTGCTAAGGAAGCTTTCGAGGCAAATTTTCACTGTTCGGAGGATATGCTAGCAGCGAAAGAGCTTGCTGAATCTGCTGCTGCAGCTGTGGCCAAATCCAGAAAGGAAAAGAAGCAGAGACGAGCCCAGGAGGCAAAAAACTCAGGTCCTGCTCAATCTGCTGCTGAGGCTACTCGGAAAATGTTGATAAATAAGAGGCTCAGCTCCAAAGTCAATCTTGATCGCTTGGATAATTTATTTGATGATATTGAGGCGTCAGTGAACAAGAAGGTACGATTTGAGCTGCACTCCCATAAAGGTGGTAAACTAGAGCCTGAGCCAGAGGACAAAGACAAAGGTGATGATATGGGATCCGTTGATAAATTTGAGTACGGAGGTTATATGGGCAAGGAAAATAATTTGCAGGAAGAAAAACTGGCGGAGTATGATTGTGGAGATGATGATTATAGCTATGATGATGATGACTAA 1845 0.4163 MIYCDHCQKFVHGMRPDEASLCCEACGKVLEDMYFSQEPTFIKDASGQSKLSGNYVKTIQSGYSASRKRTLDRAFDDIRYLSQNLGVEDVRLSTQALTFYKIAMERNFTKGRKSEQVQAACLYIAFRAEDKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIFKYTRNLLNQRNIIVTETALSIIASMKRDWMQTGRKPSGLCGAALYIAALAHGFKYSKSDILRIVHVCEATLTKRLVEFENTTSASLTVGELKMMAKEREKIPIEKPNCGSEEHVSKDLLCEHKDSGVPHWAHGLCERCYEDFVKLSGGLDGGLDPPAFQRAERDRMTKSPCEESGTQSSDLAKASNGMCAGRKEDLSAPGPESVADVEEMATKDGGNDESNGEDMSAKTPSESESLSDIDDLEVEGYLHNEEEKHYKTLIWSEMNREYLEEQAAKEEAAAAAKEAFEANFHCSEDMLAAKELAESAAAAVAKSRKEKKQRRAQEAKNSGPAQSAAEATRKMLINKRLSSKVNLDRLDNLFDDIEASVNKKVRFELHSHKGGKLEPEPEDKDKGDDMGSVDKFEYGGYMGKENNLQEEKLAEYDCGDDDYSYDDDD 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4840g00042 614 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 530 IPR000812 GO:0006352|GO:0070897
Pral4840g00042 614 Gene3D Single helix bin 407 458 - -
Pral4840g00042 614 MobiDBLite consensus disorder prediction 486 516 - -
Pral4840g00042 614 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Pral4840g00042 614 Coils Coil 487 507 - -
Pral4840g00042 614 MobiDBLite consensus disorder prediction 600 614 - -
Pral4840g00042 614 MobiDBLite consensus disorder prediction 553 614 - -
Pral4840g00042 614 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Pral4840g00042 614 MobiDBLite consensus disorder prediction 553 578 - -
Pral4840g00042 614 SUPERFAMILY Cyclin-like 74 163 IPR036915 -
Pral4840g00042 614 SMART cyclin_7 76 158 IPR013763 -
Pral4840g00042 614 SMART cyclin_7 176 259 IPR013763 -
Pral4840g00042 614 MobiDBLite consensus disorder prediction 391 419 - -
Pral4840g00042 614 FunFam Transcription factor IIIB subunit 173 262 - -
Pral4840g00042 614 Coils Coil 444 464 - -
Pral4840g00042 614 SUPERFAMILY Cyclin-like 172 264 IPR036915 -
Pral4840g00042 614 MobiDBLite consensus disorder prediction 489 503 - -
Pral4840g00042 614 Gene3D - 62 165 - -
Pral4840g00042 614 MobiDBLite consensus disorder prediction 329 362 - -
Pral4840g00042 614 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Pral4840g00042 614 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Pral4840g00042 614 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Pral4840g00042 614 Gene3D - 173 267 - -
Pral4840g00042 614 Pfam Brf1-like TBP-binding domain 416 540 IPR011665 -
Pral4840g00042 614 Pfam Transcription factor TFIIB repeat 170 259 IPR013150 GO:0017025
Pral4840g00042 614 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Pral4840g00042 614 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4840g00042 Pral-Chr4840 209771 224295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4840g00042 1 521 Inorganic Solute Cotransporters AT2G01280 42.505 1.45e-114 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4840g00042 K15196 - gmx:100817609 674.47