Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4840g00032 ATGAGTTTTCACCACTTCGAAAATGGTAGCGACCGTTTCCGCGGGGCTATAAAACAATTACTCTCCGCTCCTCTTTTTGTTTCCCAGCGTCCTCTCTCTAACATTTTTGGGGCCATAGGTCATCCTGGCGAGATCGAGTCTAGCAAATCTGAGATTGGATTTCAGATTCTGAACCCTTCCTTCATGGAGACCAGAGCAACGGATAAAATCATCGGTGAAGTCGACGGCCATTTCCGGGTCGAGACAAGCGGCCTGTCCCTGAATCTGACTGAAGAAGTAGAAGCTAAGAGGCCCGATGCCGGCACAAGTGGCCACACTAAGCTCTGTGCTAGAGGCCACTGGAGGCCCGGTGAAGATGCCAGGCTCAAGGAGCTGGTGGCGCAGTATGGTCCTCAAAACTGGAACTTGATCGCCGAGCATCTCGAAGGACGATCAGGCAAGAGTTGCAGATTGAGGTGGTTTAATCAGCTGGATCCTCGGATCAACAGAAGGGCTTTCTCCGAGGAAGAAGAGGAGAGACTGTTGGCGGCTCATAAGGCGTACGGTAACAAGTGGGCTTTGATTGCCAGGCTGTTCCCAGGGAGGACCGATAACGCAGTGAAGAACCACTGGCACGTGATCATGGCGAGGAGGCAGAGGGAGCAGTCACACGTTTTCAGGAGGAGGAAACCCACTTCTGAGAACAATGTTCCGAACGGATTAAAACTCACTCTAACCAACAATGCCGGCAGCGAATCCAGCATGTCAAGCACCAGAGACGAGTCTGCTTCAACCTGCACTAATCTCTCCCTTACTCCCTCCTCCGCCAAACCTCTCCTTTCGACTCTAGTCTGA 834 0.5216 MSFHHFENGSDRFRGAIKQLLSAPLFVSQRPLSNIFGAIGHPGEIESSKSEIGFQILNPSFMETRATDKIIGEVDGHFRVETSGLSLNLTEEVEAKRPDAGTSGHTKLCARGHWRPGEDARLKELVAQYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLLAAHKAYGNKWALIARLFPGRTDNAVKNHWHVIMARRQREQSHVFRRRKPTSENNVPNGLKLTLTNNAGSESSMSSTRDESASTCTNLSLTPSSAKPLLSTLV 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4840g00032 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 158 212 IPR017930 -
Pral4840g00032 277 ProSiteProfiles Myb-like domain profile. 111 157 IPR001005 -
Pral4840g00032 277 SUPERFAMILY Homeodomain-like 111 204 IPR009057 -
Pral4840g00032 277 CDD SANT 174 205 IPR001005 -
Pral4840g00032 277 MobiDBLite consensus disorder prediction 225 263 - -
Pral4840g00032 277 Pfam Myb-like DNA-binding domain 163 206 IPR001005 -
Pral4840g00032 277 Pfam Myb-like DNA-binding domain 111 157 IPR001005 -
Pral4840g00032 277 Gene3D - 111 162 - -
Pral4840g00032 277 FunFam MYB transcription factor 164 235 - -
Pral4840g00032 277 PANTHER MYB PROTEIN-RELATED 111 245 - -
Pral4840g00032 277 SMART sant 162 210 IPR001005 -
Pral4840g00032 277 SMART sant 110 159 IPR001005 -
Pral4840g00032 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 157 IPR017930 -
Pral4840g00032 277 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
Pral4840g00032 277 Gene3D - 165 226 - -
Pral4840g00032 277 MobiDBLite consensus disorder prediction 215 263 - -
Pral4840g00032 277 CDD SANT 114 155 IPR001005 -
Pral4840g00032 277 FunFam MYB transcription factor 111 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4840g00032 Pral-Chr4840 131493 133883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4840g00032 101 269 MYB Transcription Factor Family AT5G17800 64.740 4.22e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4840g00032 Myb_DNA-binding 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4840g00032 K09422 - qsa:O6P43_009928 329.331