Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4840g00026 ATGGGAAGGCCTCCTTGCTGTGAGAAAGTTGGCGTCAAGAAGGGTCCATGGACACCTGAGGAGGACATCATTCTCGTTTCTTACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTTCCTACTAATACTGGTTTGTCAAGGTGCAGCAAAAGCTGCAGGCTTAGATGGACGAACTACCTCAGGCCAGGAATCAAGAGGGGAAACTTCACTTCCCATGAGGAAGGAATGATAATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCGTACCTTCCCCAAAGGACAGATAACGATATAAAGAATTATTGGAACACCCATCTGAAGAAGAAGCTGAAAAAACTTCAAACAGGATTGGACCCCCACCTTGCAGCAAACTCCACAACAGCTAATCAGTTTGTTTGTAAGAGTTTTAATGAGAGAGAGAGTTTAGCTGTGATGGGAAATAACCATGGTTCGTCTCAAAGGTTAAATCAGTCTCAATCATCCACCTATGCATCCAGCACTGAGAACATCTCTCGCCTCCTAGAAGGTTGGATGAGATCCTCTCCAAAGACAGACACAACTAATCTCCTCAAAGCAACCCAAAATCACACAGAGCTTCAGAGCAACAGCAACATCGAAAATGGTAGTAACATGGCGAAGTCTTCTCTTAGTCTGATGTCCAACCAAACCAAAGACGAGCGGGAAGAGGGCGGTGGTGATATGATGTCCCATGAAGAGTTTGATTCCATTCTGTCTTATGAGAACCTTAATAATGCTTCTTGGGACAAGTCCACAGGCGATTCTACGCCTCCAACTCAGGAGAGTTCTGGAGCGGCTGCTGCTGATGAAGATGACAAGGTTCGTTTTATGGCTCATGATGATGAGGGGAATAAGCAAAGATCTGAGAACACTACTGCTGATCCTCCATTGTCAGTTTTCGAGAAGTGGCTCTTAGATGAAAATGTTGGTCAAGTAGAGGAGATGATGGAATTATCCCTTACTTTCTAA 1005 0.4458 MGRPPCCEKVGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTSHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGLDPHLAANSTTANQFVCKSFNERESLAVMGNNHGSSQRLNQSQSSTYASSTENISRLLEGWMRSSPKTDTTNLLKATQNHTELQSNSNIENGSNMAKSSLSLMSNQTKDEREEGGGDMMSHEEFDSILSYENLNNASWDKSTGDSTPPTQESSGAAAADEDDKVRFMAHDDEGNKQRSENTTADPPLSVFEKWLLDENVGQVEEMMELSLTF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4840g00026 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pral4840g00026 334 SMART sant 13 63 IPR001005 -
Pral4840g00026 334 SMART sant 66 114 IPR001005 -
Pral4840g00026 334 MobiDBLite consensus disorder prediction 257 275 - -
Pral4840g00026 334 MobiDBLite consensus disorder prediction 203 227 - -
Pral4840g00026 334 CDD SANT 16 61 IPR001005 -
Pral4840g00026 334 MobiDBLite consensus disorder prediction 153 172 - -
Pral4840g00026 334 MobiDBLite consensus disorder prediction 278 300 - -
Pral4840g00026 334 Gene3D - 13 66 - -
Pral4840g00026 334 MobiDBLite consensus disorder prediction 203 241 - -
Pral4840g00026 334 MobiDBLite consensus disorder prediction 257 306 - -
Pral4840g00026 334 CDD SANT 69 111 IPR001005 -
Pral4840g00026 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral4840g00026 334 Gene3D - 68 137 - -
Pral4840g00026 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral4840g00026 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral4840g00026 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pral4840g00026 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 228 - -
Pral4840g00026 334 FunFam MYB-related transcription factor 13 66 - -
Pral4840g00026 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral4840g00026 334 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4840g00026 Pral-Chr4840 93788 95624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4840g00026 1 119 MYB Transcription Factor Family AT5G62470 91.597 8.63e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4840g00026 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4840g00026 K09422 - gmx:100817854 421.394