Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral483g00045 | ATGGGTTCTCTTCAGCCCCCGATCTCTTCCACTTCTTCTTCATCTTCAGGTTTTTTCATCAGTGATATGTTTGGGGTCAACTTGGAACGAGAAGGAGAAGAAGGGGAGGAGGAAGAAGAAGAAGAAGAGCTTGGAGCTATGAAGGAGATGATGTACAAGAATGCCGCTCTGCAACCCGTCGACATCGACCCTTCCACCATCCGGAAACCCAAACGGAGGAATGTCCGGATCAGCGACGACCCACAGAGCGTTGCCGCCCGCCACCGCCGTGAGAGAATCAGCGAGAAGATCCGCATCCTCCAGAGACTCGTCCCCGGCGGAACCAAGCTCGACACCGCCACCATGCTCGACGAAGCCATTCGCTACGTCAAGTTCTTGAAGAGACAAATCAGGCTGCTCCAACCTCCACCACCACCCCAGCAACAACACGGCAACAATATGAGCACGATCTCCACCGGCAATTCCACACTCGCCAATTGGCCTTTTACAGCAACCACACTCCCCGCCGCCACCGGCGTAGGGTTCAACGGTGGGGACAGCTCCTCGGGGTTTAACCATGAGGTAATAAGTGAATAA | 576 | 0.5451 | MGSLQPPISSTSSSSSGFFISDMFGVNLEREGEEGEEEEEEEELGAMKEMMYKNAALQPVDIDPSTIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKLDTATMLDEAIRYVKFLKRQIRLLQPPPPPQQQHGNNMSTISTGNSTLANWPFTATTLPAATGVGFNGGDSSSGFNHEVISE | 191 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral483g00045 | 191 | SMART | finulus | 83 | 132 | IPR011598 | GO:0046983 | |
Pral483g00045 | 191 | Pfam | Helix-loop-helix DNA-binding domain | 87 | 126 | IPR011598 | GO:0046983 | |
Pral483g00045 | 191 | CDD | bHLH_AtIND_like | 78 | 133 | - | - | |
Pral483g00045 | 191 | Gene3D | - | 80 | 143 | IPR036638 | GO:0046983 | |
Pral483g00045 | 191 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 77 | 126 | IPR011598 | GO:0046983 | |
Pral483g00045 | 191 | FunFam | BHLH transcription factor | 80 | 144 | - | - | |
Pral483g00045 | 191 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 13 | 161 | IPR045843 | GO:0003700|GO:0006355 | |
Pral483g00045 | 191 | Coils | Coil | 30 | 50 | - | - | |
Pral483g00045 | 191 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 82 | 136 | IPR036638 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral483g00045 | Pral-Chr483 | 393778 | 394353 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral483g00045 | 44 | 149 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT5G09750 | 79.279 | 4.67e-48 | 154 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Pral483g00045 | HLH | 2.6e-07 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral483g00045 | - | - | pcin:129307933 | 232.646 |