Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral483g00037 ATGGCTCCGGCCGACTCCCCGGCGGCGGCTCAGAGGCTTATCGGCTTCAGCCGCCGTACCCAGGCTCCGCGCCAGTCGTTGCCGCCGGCCTCCCCTCCGGTCAAGAAGTATAAGTCATTGACCGAGATAATGGCCAAGGCTCGGTATGCTGTTGTTGAGAGGGATGATTACAGCGACGTGTTGTGTGACCAATGTGGCTCTGGTGAACGCCCGGACGAGCTGCTTCTGTGTGATAAATGCGATAAAGGCTTCCATATGAAATGCGTGAGGCCCATTGCTGTTAGAGTTCCTATTGGATCATGGCTCTGCCCTAAGTGTTCGGGCGAGAAGAGAGTAAGAAGTTTTTCTCAGAAGAAGATAATTGATTTTTTCCGGATTCAGAAATGTGCTGATCTTAAAAACAAATGCAGTTCTCCCCAAGATGCCAAGAAGCGTAAAAGGCGCACCTCACTGATATTGCACAAGAAACGAAGAAGACTATTGCCATTTATTCCTGCAGAGAATCCTTCCCAGAGGCTGAAACAGATGGGTTCTCTTGCTACTGCTTTAACAGCATTGCATATGGAATTCAGTGATGATCTCACATACTCACCTGAAATGGCTCCTAGGTCTGCTAATCATGCCGATTTTGAAAATGGTGGCATGCAGGTTCTTTCCAGGGAAGATATTGAGACCTTGGAACTCTGCAGAGCAATGTGTAGAAGAGGCGAATGCCCTCCCCTTATGGTTGTTTATGATTCACGTGAAGGGTATACAGTAGAGGCCGATGGCCCAATCAAGGATATGACATTCATTGCTGAATACACAGGCGATGTGGATTACATTAAGAACCGAGAACATGATGATTGTGACAGTCTGATGACCCTTCTGCTAGCAACTGATCCTACTAAAAGTCTTGTAATCTGCCCTGATAAACGTGGAAACATTGCTCGCTTTATAAATGGCATCAACAATCATACACAGGAAGGTAGGAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCCACTCGTGATATTTCAAAAGGGGAGAGGCTTTATTATGATTATAACGGTTATGAGCATGAATACCCTACTCATCATTTTGTCTGA 1122 0.4599 MAPADSPAAAQRLIGFSRRTQAPRQSLPPASPPVKKYKSLTEIMAKARYAVVERDDYSDVLCDQCGSGERPDELLLCDKCDKGFHMKCVRPIAVRVPIGSWLCPKCSGEKRVRSFSQKKIIDFFRIQKCADLKNKCSSPQDAKKRKRRTSLILHKKRRRLLPFIPAENPSQRLKQMGSLATALTALHMEFSDDLTYSPEMAPRSANHADFENGGMQVLSREDIETLELCRAMCRRGECPPLMVVYDSREGYTVEADGPIKDMTFIAEYTGDVDYIKNREHDDCDSLMTLLLATDPTKSLVICPDKRGNIARFINGINNHTQEGRKKQNCKCVRYNVNGECRVFLVATRDISKGERLYYDYNGYEHEYPTHHFV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral483g00037 373 Pfam SET domain 279 361 IPR001214 GO:0005515
Pral483g00037 373 FunFam Histone-lysine N-methyltransferase ATXR5 145 373 - -
Pral483g00037 373 SUPERFAMILY SET domain 229 361 IPR046341 -
Pral483g00037 373 MobiDBLite consensus disorder prediction 1 34 - -
Pral483g00037 373 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 134 371 - -
Pral483g00037 373 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Pral483g00037 373 Pfam PHD-finger 62 107 IPR019787 -
Pral483g00037 373 CDD SET_ATXR5_6-like 236 373 - -
Pral483g00037 373 SMART PHD_3 61 107 IPR001965 -
Pral483g00037 373 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Pral483g00037 373 SUPERFAMILY FYVE/PHD zinc finger 28 107 IPR011011 -
Pral483g00037 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 121 IPR013083 -
Pral483g00037 373 ProSiteProfiles SET domain profile. 239 361 IPR001214 GO:0005515
Pral483g00037 373 Gene3D SET domain 145 373 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral483g00037 Pral-Chr483 345781 350214 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral483g00037 59 115 C2H2 Transcription Factor Family AT3G01460 34.483 2.15e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral483g00037 SET 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral483g00037 K24406 - qsa:O6P43_023354 642.884