LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral483g00007	ATGGTCAGATGCATACTTTCCAAAAATGTCGTCATTTTCTCATCCATTTCTTCTTCGTCATCGTCAGTTCGTCCTCTCCTCTTGAAGTTTTGTCACTGCTCTAGCTCGTTGAATAGCTTCTCATTACTTAGACGCCGTTATCATGTATCCAGAAATATACCAGTCCCAGTATGGTGGGATTTTGAGAATTGCCATCTACCGTCTGATGTGAATGTTCACAGAATTGCTCACTTCTTAACGGAGGCAGTTAGAGGCAAGGGCATCATGGGGCCTCTTCAAATTAAGGCATTTGGTGACGTTTGTCAGCTCTCGAGGGTCAACCAGGAGGCTCTCGCGTCCACTGGGATCAAAATCATCCACGTTCCTAAAGGTGGAAAGAATAGTGCTGACAGATCTCTTCTTATTGACCTTATGTTTTGGGTTTCCCAAAATCCTCCTCCCGCGCATTTGTTTCTAATTTCGAGTGATAAGGATTTTGCTGAAGTATTGCATCGTTTGAGAATGAGTAATTACAATATCCTAATTGCTGGTATGAAGACTTCTTCTCTTCTATGCAATGTAGGAACTATAGTGTGGCACTGGAATTCATTACTTAGAGGAAAAAATCTTGATGGAAAACATTTCAATCATCCTCCTGACGGTTTGTATGGTGGTCACAATGATGCACCTCTTGAAGACGCTTTCCCCGAGTTGCGCCCAATTCCAAAGGCAGTTGTGCGGCAGGTTCATCAGATATTGAGATTGTATCCAAATGGGGTCTCTTTATTATGTCTTAAAACAGAATTGGAAAGAACTGGTATCTCCTTGGATAAAGATTACTATGGATATAAAAGATTTTCCTATTTTATTTCATCAATTGTGCGTGTACATCTTCAGCTTGTACCTGGTAGAGGACTTATTGTACATCGCATCCCTGAAGAATCTCCTGAACCCACTAAAAGCAGTTTTGTACCATCAACAAAATTAGTTGAAAATGAGGAGTGGAATCATGTGCCTACTTCAACAGAGTTAGATGCTACTTCTGAAAAGTCAAATAATGATGACAAATATGCTATGCCAACAAAAAAGGAACCTGATGCAGCTTGTCACATTGGTGGAAGCATGGAAACTCACAACAATAGTTTTAGTAAACATCTAACTTTCTTGGGTTGGATCAAAAGTTGGTGGCCATTGAGGAAAAAGTTTGTAAACATGCATACTTCGACTGCTCGTGTGAATGAGATGGTTAGTAATGCTACAGAGCCCGAGTTATTGGGTTGGAAACAGACAGTTAGTCATGATGATAGTCATGATAAAGAGACTGAGATGTCAAATTTGAAACAGAGGGTTAGTCATTCAGAAGGGCTGCATTCGTTAAAACAGAGACAAATGGCTAGTCAATTTAAGGAGCCTGAGTTATCAGAACTGAGACAGACAGTGGATCATTCTGGAGAGCAGGATTTATTTCATTGCAGCTCCTTTTGGAAGGAAATGGAATCTTTTGTTTTCACCTCCAGAGGAGCAATTATTGTCTTCCACTCAAGAAGCAGGAAGGACATGGCGCTAAGTTTTAAAAAGTATGGACCCCATGTTCTCCACTCTCTCAGTGAAAGTGATCTCCTTCTATTGGTGGATTTGTTAATATCTGAGAAAAAATGGTTAGAGGAAAGGCCTTCTCAGACTTTTCCTTTCCGTGCCATTCCAAGCAGAACAACACAAAGTAAATTGCAAAAATCATCAGAATGTCAATTTGATAAAAACCAGAGTATTCCTCATGACGTGGTTTCTTCACCTGCCACTCAAAAAGGGCATGCTGAGAAGTCTACAACTGACATGTTAGCAGATGTTCAGAAACTTGTGAGTGAGATCTTGAGAGATCAATCAAATGGGTGCAATATGGGCCTGATACCAGATCGTTTTCTGGAGAAGTATGGCTATCATTTAGATTTTGGGAAACTTGGTTATTCTAAGTTATCCCACCTCATACGTAGCCTGCCTGGAGTGGAAACAGAGGATGCTTATTTCTTTCCTGCAAATCATGGCATACGTGCTTCTGGTAAGGAAACTTCAATTCTCAAAACCCAAGAGACAAAACCGAGTGATGTAGTGTACCACTACTCAGGGAATGAGTTCTGTGATTCAAACTCTGAAGATGATCAGCAAGACTCCACATGGGAGGAATTAGGACCTGCTACTGTCAGGGATTCCAACAAGAGTGACCTCGTATCAAAACCAAGGCAGAAAGCAATAGAGCTGAAGAGCGCAATAGATCTTGATTATGAGCCTGATCTCTCTGATGATGATTCTTTCGTATCTGGAGGAGATAACTCCTGTTTAACTCAATCAGAGTATGATCACTTCTCTGCTGCAAATAATGGCATATGTGCTTCTGGTGAGGAAACTTCAATTCTCAAAACTCAAGAGACAAAACTAGGTGATGTAGTGCACCACTATCCAGAGAATGAGTTATATGATTCATTCTCTGAAGATGACCGGAAAGACTCCCCATGGGAGGAATTAGGACCTGTTTGTGTCATCAATTCCAACGACAGTGACCTAGAATCAAAACCAAGGCAGAAAGCAATAGAGCTGAAGACGGCAATAGATCCTGATTATGAACATGATCTCTCTGATGATGATTCTTCCGAATCCGGTGGAGATAATTCCTGTTTAACTCAGTCAACCGGGGAAGGGGCGCCAAAACTTAACGGGAAAGATGGTTCTTTGCAAAATCTGGACTTAATGTATGGCAGTCAAGAAGGAGGCGATAGTGTGAATCCGAATGAAGCCAATACAGTAGGCAATGGTCTGACTGATGGTTTAAATCCATCAAGAATTTCCACTCCGGCTGCCAGTTCAGGAATTCATTCAGGGGGCAATAAGGAGGGGGACGAGCCTAAGAAAAACGGTTCATTTGATGCTGAACCAGTCTCACACAAGGATAAGGAGCTGATGCAAGAGATATTACGATGCTTGAAAAGGGCAAATGACTTGAAGATGCCAAATTGA	2988	0.4137	MVRCILSKNVVIFSSISSSSSSVRPLLLKFCHCSSSLNSFSLLRRRYHVSRNIPVPVWWDFENCHLPSDVNVHRIAHFLTEAVRGKGIMGPLQIKAFGDVCQLSRVNQEALASTGIKIIHVPKGGKNSADRSLLIDLMFWVSQNPPPAHLFLISSDKDFAEVLHRLRMSNYNILIAGMKTSSLLCNVGTIVWHWNSLLRGKNLDGKHFNHPPDGLYGGHNDAPLEDAFPELRPIPKAVVRQVHQILRLYPNGVSLLCLKTELERTGISLDKDYYGYKRFSYFISSIVRVHLQLVPGRGLIVHRIPEESPEPTKSSFVPSTKLVENEEWNHVPTSTELDATSEKSNNDDKYAMPTKKEPDAACHIGGSMETHNNSFSKHLTFLGWIKSWWPLRKKFVNMHTSTARVNEMVSNATEPELLGWKQTVSHDDSHDKETEMSNLKQRVSHSEGLHSLKQRQMASQFKEPELSELRQTVDHSGEQDLFHCSSFWKEMESFVFTSRGAIIVFHSRSRKDMALSFKKYGPHVLHSLSESDLLLLVDLLISEKKWLEERPSQTFPFRAIPSRTTQSKLQKSSECQFDKNQSIPHDVVSSPATQKGHAEKSTTDMLADVQKLVSEILRDQSNGCNMGLIPDRFLEKYGYHLDFGKLGYSKLSHLIRSLPGVETEDAYFFPANHGIRASGKETSILKTQETKPSDVVYHYSGNEFCDSNSEDDQQDSTWEELGPATVRDSNKSDLVSKPRQKAIELKSAIDLDYEPDLSDDDSFVSGGDNSCLTQSEYDHFSAANNGICASGEETSILKTQETKLGDVVHHYPENELYDSFSEDDRKDSPWEELGPVCVINSNDSDLESKPRQKAIELKTAIDPDYEHDLSDDDSSESGGDNSCLTQSTGEGAPKLNGKDGSLQNLDLMYGSQEGGDSVNPNEANTVGNGLTDGLNPSRISTPAASSGIHSGGNKEGDEPKKNGSFDAEPVSHKDKELMQEILRCLKRANDLKMPN	995

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral483g00007	995	MobiDBLite	consensus disorder prediction	905	948	-	-
	Pral483g00007	995	CDD	LOTUS	606	661	-	-
	Pral483g00007	995	Gene3D	-	605	666	IPR041966	-
	Pral483g00007	995	MobiDBLite	consensus disorder prediction	953	974	-	-
	Pral483g00007	995	Pfam	OST-HTH Associated domain	508	565	IPR025677	-
	Pral483g00007	995	ProSiteProfiles	OST-type HTH domain profile.	605	679	IPR025605	-
	Pral483g00007	995	CDD	LOTUS	235	303	-	-
	Pral483g00007	995	ProSiteProfiles	OST-type HTH domain profile.	234	305	IPR025605	-
	Pral483g00007	995	MobiDBLite	consensus disorder prediction	858	974	-	-
	Pral483g00007	995	MobiDBLite	consensus disorder prediction	876	892	-	-
	Pral483g00007	995	MobiDBLite	consensus disorder prediction	423	448	-	-
	Pral483g00007	995	Pfam	NYN domain	55	187	IPR021139	GO:0004540
	Pral483g00007	995	CDD	PIN_limkain_b1_N_like	54	176	-	-
	Pral483g00007	995	Gene3D	-	51	194	-	-
	Pral483g00007	995	Pfam	OST-HTH/LOTUS domain	237	292	IPR025605	-
	Pral483g00007	995	Pfam	OST-HTH/LOTUS domain	606	664	IPR025605	-
	Pral483g00007	995	PANTHER	LIMKAIN B LKAP	44	615	IPR024768	GO:0005777\|GO:0010468
	Pral483g00007	995	MobiDBLite	consensus disorder prediction	423	440	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral483g00007	Pral-Chr483	93627	97922	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral483g00007	57	200	C2H2 Transcription Factor Family	AT5G61190	40.690	2.35e-31	130

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral483g00007	-		-	pcin:129296579	1115.91