Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral483g00006 ATGATCAAACTCCTCTTCCCTAAAAATGTCACTATCATATCATCTTTTCCTTCCTCCTCACCATTAGTTCGTCCTCTTCTCCAAATTTGTCACTTCTCAGCCTCGTCATATAATCGTTCATCCTTAAGACCCGATGATGACGAAACACGAAATGAGCGAAATGTACCAATTTCAGTGTGGTGGGAGTTCGATGGCTGTAACTTACCTGCTGATGTCAATGGTTACAGAATCACCCACTGCATAACAGAAGCTCTTAGGGCCAAAGGGATAAAGGGGCCACTTCAAATCAAGGCTTTTGGTGATGTCCTGCGACTTCCAATTGCCAATCAGGAAGCTCTCTCTTCCACCGGGATAAATCTGGTCCACGTTCCCAATGGCGGAAAAAATCCTGCTCACGGATCTCTTCTTGTAGAACTTATGCATTGGGTTTCCAAAAATCCTCCACCGGCTCATCTGTTTTTGATTACTGATAATAGGGTTTTTGCTGATATGTTGCACCGTTTAAGATTGGATAACTACAACATCTTGCTTGCAACACCAACAAAGGGTCCGAAAGTTCTGTGCAATGCAGCCACTATAATGTGGCATTGGGACTCATTAGTTAGAGGAGAAAATCTTGATGGAAAACACTTTAATCATCCTCCTGATGGTTTGGATGGTTCTTGGTACGGGCACCACAAGGTGCCTCTTGAAGACCCTTTCTTAAATGGTGAGCAGTCACAAATTGAGGAGGTACCTATCTCAGATTTGGAATTACGTACAGTACCAAGGGCAGTTGTGAGGCAAGTTCAACAAATATTGAACTCATATCCAACAGGTATCTCTGTATCAGACCTTCGAGCAGAGATAGCAAGAGCTGGTATTTTCTTGGATAAAGACTACTATGGTCATAAAAAGTTTTCCCGATTTCTCTTGTCAGTGGCAAATGTACAACTTCAGCCTGGACCTGATAAATTACTTTTTGTTCATCCCATCCACCAAAAATATCCTGGAACCTTGGATATCAGTTCCGAATCATCTACAGCACCTTTTTATGGCGAGGAGTTGAACCAGGTGGCTACTTCAAAGTTAAGTGGTAAGGCCGAAAAGGTGGTTGGGGATGCAGATGTGAATACTGTTGATGGTGAGAAGTTGAATCAGCAGGCTACTTCAAAGTTAAGTGGTGAGGTGGAAAAGGTGGTTGGGGATGCAGAAGTGAAACCGTTAACAGCCTCATCTCAGGTCCCAGAAGAGGTCCAACAGGTTCCGGATGTGGTTAACGCACATGTAGCTGAGAATCAATTACCTCTGAAGGAGAATGAAATTCTTAGCTCTAGTGATGCAAGTCTGAGTGTCACAGAGAAAAATACAACTTCAGAGAATTATTCTACTGAACAAAGCAACACAGTTTCAGAAAAGAGTGTTTCTTCAAATGATATTTCTGGAAAGTTAAATGCTGAGGACAAAGATGACAAACCCACAATAAAGGAAGCTGATGCAGTTTGTCAAGTTCCTCATTCTTTACCAGTTGATGAATCTATGATTGACAAAAGCACTGGTGAAAGCCCTGAAACTTGCAGCAAAAATTTTGGCAGACGTCCGGGTTTCTTTGCTTGGATTAGCAGCTGGTGGCCATTCAGGAAAAATGGTGGAAACTCAAATAATTTGACTCATCAACCGGATCTGATGCCTAGTAATAATAAAGAGCCCAAGTCTTCAAACCCGAGCGAGGCAACCTGTCATTCTGAAGAGTCTGAGTTGTCAGATCCAAAACAAACAGTTTGTCATTCTGAAGAGTCTGAGTTCAGAGAACAGAAACAAACAATTAGTCACTCTGAGGAGCCCAAGTCATCTGAACCAAGACAGAAAGTGAATTGTTTATCAGAGCCTGAGTTATTTTCTAGTAGTTGCTTTTGGAGTGACATGGAATCTTTTGTTTTTACTGGCAAAGGATCAACTCTGATCACCCGTTCTAAAAGCAGGAAGGATATGATCCGTAAATTTCAAAAGTTTGGACCGCAGGTTCTTAGTTCTCTTGGCGAAAATGATCTCCTTCAACTGGTCAATATGTTGATATCTGAGAAAAAATGGTTGGAGGAAAGGCCTTCCCTGACTTTTCCTTTCCTGGTCACTCTAGAAGCTCGGAAGAACTCAGTGGGCCTATCACATGGTGCAACTGGCTTGAGATCTCTCTTCCTAAGCAAAGAAGGACGGAGCACCTTGCAAAAATCATCAGAAGGTGACAATGGTAAAAGATATCAGAGTAATCCTGACACTGGAGGTTCTTCACCTGCCATTAAAAATAAGCACACTGAAAAGTCTAGAACTGACACATTAGCGGATATTCAGAAGCTTGTGAGTGAAATATTGAGGGAACACTCAGATGGGTATAATATGTGTATGATACCAAAACTTTTTCTGGAGAGGTATGGCTATCCTCTTGATGTTCAGAATCTTGGTTACCAAAAGTTGGCAAACTTGTTGCATATTCTGCCTGGAGTGAAAGTAGAGTCCTCATACATCTTTGCGGCTGATCATCCCGTTTTTGCTTCTGACAAGGAAATGTCAACTCTCAATACTTTAGTGAATAATTCAAGTGTTACTGCACCATATTCGGATAGGAAGTCATCTGATTCATGCCATAAAGATGATCGCAAAGACTCCCCCTGGGAAGAATTAGGACCTGTCTCAGTCAGCAATCCTAACCAGAGTGACCTGGAGACAAAATCAGGGCAAAAGGCCTTAAAGCTGGAGACGTCAATGCAGCCTGATTACGAACCTTCACTTTCTGATGATGATTCTTCTGAATCTGAAGGAGATAGATCTTGTTTAACTCGATCAGAAGAGGAAGGACGGTCAAAACATAACGTGGAAGACAGCTCTCTTCTGCAAACTCTGGAGTCATTTTACTGTCGCCAAGAAGAGGATAGTGCAGAGTCAGAAAACACTGACACCAAAGGCAATGGCCTGACTGGTGGTTTAGGCTCATCCAAGCATTCCACTCCAGGAATGCTTTCCAAAGTTCATTCAGGGGCAGTGCTTAAAGAGAAGCAAAGACCTCACAAAAGCTATTCATTTGTTGCCGACCCAGACTCACGAAAGAAGGATGAGCTAATTGATGGAATATTACAGAATTTGAGGAAATCAGATGAGTTGAAGATGCGGAATTGA 3150 0.4225 MIKLLFPKNVTIISSFPSSSPLVRPLLQICHFSASSYNRSSLRPDDDETRNERNVPISVWWEFDGCNLPADVNGYRITHCITEALRAKGIKGPLQIKAFGDVLRLPIANQEALSSTGINLVHVPNGGKNPAHGSLLVELMHWVSKNPPPAHLFLITDNRVFADMLHRLRLDNYNILLATPTKGPKVLCNAATIMWHWDSLVRGENLDGKHFNHPPDGLDGSWYGHHKVPLEDPFLNGEQSQIEEVPISDLELRTVPRAVVRQVQQILNSYPTGISVSDLRAEIARAGIFLDKDYYGHKKFSRFLLSVANVQLQPGPDKLLFVHPIHQKYPGTLDISSESSTAPFYGEELNQVATSKLSGKAEKVVGDADVNTVDGEKLNQQATSKLSGEVEKVVGDAEVKPLTASSQVPEEVQQVPDVVNAHVAENQLPLKENEILSSSDASLSVTEKNTTSENYSTEQSNTVSEKSVSSNDISGKLNAEDKDDKPTIKEADAVCQVPHSLPVDESMIDKSTGESPETCSKNFGRRPGFFAWISSWWPFRKNGGNSNNLTHQPDLMPSNNKEPKSSNPSEATCHSEESELSDPKQTVCHSEESEFREQKQTISHSEEPKSSEPRQKVNCLSEPELFSSSCFWSDMESFVFTGKGSTLITRSKSRKDMIRKFQKFGPQVLSSLGENDLLQLVNMLISEKKWLEERPSLTFPFLVTLEARKNSVGLSHGATGLRSLFLSKEGRSTLQKSSEGDNGKRYQSNPDTGGSSPAIKNKHTEKSRTDTLADIQKLVSEILREHSDGYNMCMIPKLFLERYGYPLDVQNLGYQKLANLLHILPGVKVESSYIFAADHPVFASDKEMSTLNTLVNNSSVTAPYSDRKSSDSCHKDDRKDSPWEELGPVSVSNPNQSDLETKSGQKALKLETSMQPDYEPSLSDDDSSESEGDRSCLTRSEEEGRSKHNVEDSSLLQTLESFYCRQEEDSAESENTDTKGNGLTGGLGSSKHSTPGMLSKVHSGAVLKEKQRPHKSYSFVADPDSRKKDELIDGILQNLRKSDELKMRN 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral483g00006 1049 MobiDBLite consensus disorder prediction 544 617 - -
Pral483g00006 1049 MobiDBLite consensus disorder prediction 732 760 - -
Pral483g00006 1049 MobiDBLite consensus disorder prediction 860 998 - -
Pral483g00006 1049 MobiDBLite consensus disorder prediction 575 613 - -
Pral483g00006 1049 CDD PIN_limkain_b1_N_like 56 180 - -
Pral483g00006 1049 Pfam OST-HTH/LOTUS domain 773 831 IPR025605 -
Pral483g00006 1049 Pfam OST-HTH/LOTUS domain 258 316 IPR025605 -
Pral483g00006 1049 ProSiteProfiles OST-type HTH domain profile. 255 326 IPR025605 -
Pral483g00006 1049 MobiDBLite consensus disorder prediction 888 921 - -
Pral483g00006 1049 MobiDBLite consensus disorder prediction 501 521 - -
Pral483g00006 1049 Pfam NYN domain 57 191 IPR021139 GO:0004540
Pral483g00006 1049 ProSiteProfiles OST-type HTH domain profile. 771 847 IPR025605 -
Pral483g00006 1049 CDD LOTUS 772 829 - -
Pral483g00006 1049 MobiDBLite consensus disorder prediction 544 574 - -
Pral483g00006 1049 MobiDBLite consensus disorder prediction 976 997 - -
Pral483g00006 1049 PANTHER LIMKAIN B LKAP 45 781 IPR024768 GO:0005777|GO:0010468
Pral483g00006 1049 MobiDBLite consensus disorder prediction 927 950 - -
Pral483g00006 1049 MobiDBLite consensus disorder prediction 868 884 - -
Pral483g00006 1049 MobiDBLite consensus disorder prediction 430 488 - -
Pral483g00006 1049 MobiDBLite consensus disorder prediction 732 768 - -
Pral483g00006 1049 Gene3D - 766 834 IPR041966 -
Pral483g00006 1049 MobiDBLite consensus disorder prediction 431 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral483g00006 Pral-Chr483 82115 86699 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral483g00006 58 203 C2H2 Transcription Factor Family AT5G61190 39.041 7.01e-30 126