Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral483g00005 ATGGATTTGGACGATTTCCGATCAGTATTGGAGACGGCTGGTGTGGATGTATGGATGTTCATCGACACTGCAATCGACGTGGCTTCCATTGATTATCACAACGAGTTAAAGCGTCGAAGGGATGGAATCGTTCAGCGTCTCTATGAAGCCACTTCAGCTCCTGGACGGTGTCGGAATTGCGAAGCGATTCGTCTTAAGTCCAATGGCCACGAAATAAGAGCTCCAATCGAGAAACAGAGCTCTCCTGAACTGAAAAGAGATGCTTCGCCTGTAACGCCGCACTCTATCGGCCAAGATGACGGCGATTTAGATCCTTACGGAGGCCTTTTTGATGACGAGGAAAAGAAGATTCAAGAGATCAAAGAGCAACTTGAGGATCAGGACCAGCCCGAAGATTATGTGGTGGAGTTGCTGCAGAATCTAGCGGACATGGATATTACTTTCCAAGCGCTAAAGGAGACTGATATTGGGAGGCACGTTAATCGGTTGCGCAAGCATCCATCCAATGATGTTCGGAGATTGGTGAAGCTACTTGTCAGGAAATGGAAGGAGATTGTAGACGAATGGGTGAAGGTAAATCAACCAGGCGATATTGCTTCTGTCGTTGCTAATGGAGATTCACCTATGCAGAGAAACGCCCAGAACGGGCACAATCAGATTCCTGATTTTGCATCCTCGCCTAATCCGCACTATTGGAGTTCTGGGTCAGACCGAAACTACTCAGAAGCTGAACCAAAACCAAAGACAGTTCCTCGAAGAGCGCCGCCAAAACCAGCAAACCCAGTGCCCATGCCTGCTTCTGCTCCTCAAAATAGAAAGAGAGAAGAGGGAGATAGCAATTTTGAAGCGGACAGACTTGCTTCGGCAAGAAGGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGACAAAGAACGATCCAAGTGATGGACCTCCATGAGATCCCTAGACCCAAGAATGCCTTCTTTGCAAAGAACAAAGGTGGCGGCGGTGGTTTTCAGGGTAGGCACCGGTAA 1023 0.4809 MDLDDFRSVLETAGVDVWMFIDTAIDVASIDYHNELKRRRDGIVQRLYEATSAPGRCRNCEAIRLKSNGHEIRAPIEKQSSPELKRDASPVTPHSIGQDDGDLDPYGGLFDDEEKKIQEIKEQLEDQDQPEDYVVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKVNQPGDIASVVANGDSPMQRNAQNGHNQIPDFASSPNPHYWSSGSDRNYSEAEPKPKTVPRRAPPKPANPVPMPASAPQNRKREEGDSNFEADRLASARRRLQENYKEAENAKRQRTIQVMDLHEIPRPKNAFFAKNKGGGGGFQGRHR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral483g00005 340 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 111 197 IPR035441 -
Pral483g00005 340 Coils Coil 283 310 - -
Pral483g00005 340 ProSiteProfiles TFIIS N-terminal domain profile. 112 189 IPR017923 -
Pral483g00005 340 CDD TFIIS_I 114 187 - -
Pral483g00005 340 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 340 IPR044790 -
Pral483g00005 340 MobiDBLite consensus disorder prediction 320 340 - -
Pral483g00005 340 SMART TFS2_5 117 188 IPR003617 GO:0005634
Pral483g00005 340 Pfam TFIIS helical bundle-like domain 137 186 IPR017923 -
Pral483g00005 340 MobiDBLite consensus disorder prediction 71 104 - -
Pral483g00005 340 MobiDBLite consensus disorder prediction 205 240 - -
Pral483g00005 340 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 114 194 IPR035441 -
Pral483g00005 340 MobiDBLite consensus disorder prediction 201 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral483g00005 Pral-Chr483 75759 78494 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pral483g00005 Med26 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral483g00005 - - qsa:O6P43_030378 450.669