Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4838g00105 ATGAGTGAGGTAAATTTGCTGAAGAAAAGGAAGTTGTCTCAAAACAGTGACGACGAAGACAGGGGTAATTTTTGCGGCACGCACATGACTGAGGAGCGATACCGATCAATGCTTGGGGAACATATGCAAAAATACAAGAGGAGGTATAAAGATACCTCATCCAGTCCTGCCCAAAATCGTGTTAGTGCTCACCTTCTTAAAAGTAACACAGGTTTGAAAGCGCGAAAGTTGTTGAATGAGCACCGAAGAGGAATACATGCTCTGGAGACAACATCTGAGTGGCCTAATGATATTAATCCTCAGAAACCTGTAAACTACCGTGATGCAGAATTCAGACCGCAATATGGATCTGATAGAACTATCTATGAACCAGCTTCGTTAGATATTGGAGATGGCGTTACTTACAAAATTCCTCCTACTTATGATCAGTTAGCAGCAATGATGAACCTTCCAAGTTTCTCGGATATCCTAGTTGAGGAATTTCACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCGGCAATGATGGCTTCTGATAAGAGGGGTGGAACTAGAAACCGAGCAGGCATGGGGGAAACCTTACCTCAATATGATTCACTTCAGGCACGATTGAAGGCCATGTCAGCTTCTAATTCACCTCATCAATTTAGTCTGAAAGTATCTGACATTGGTTTGAATTCTTCCATCCCAGAGGGAGCTGCTGGAAATATTAAGCGATCTATTTTATCCGAGGGTGGTGTATTGCAGGTTTATTATGTGAAGGTTTTAGAGAAAGGTGACGCGTATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTAAAGAAAGACCCTTCTTTGATTGAGAAGGAGGAAATGGAAAGAATTGGAAAAGTCTGGGTAAATATTGTAAGAAGAGAGATACCAAAGCACTATAGATTTTTTACTGGTTTCCATCGAAAGCAACTTGCTGATGCCAAGAGGTTCTCAGAGAACTGCCAAAGAGAGGCATGCTCTGTCAGAATGAAAGCGAGTAGATCACTTAAATTCATGAAGAGTGCACCCATTCGCACTCGAAAACTAGCTAGAGATGTCTTGCTGTTCTGGAAACGATCAGATAAGGAGATGGCAGAATTGAGGAAAAAAGAGGAGAAAGAAGCTGCAGAAGCTTTGAGGCGTGAACAGGAGCTTCGGGAAGCAAAGAGGCAGCAGCAAAGGCTGAATTTCCTTATACAGCAAACTGAGCTATACAGTCATTTTATGCAGAACAAGTCGAACTTACTGTCCTCTGATGTTTTACCTACAGTAGATGAAAAAGCAGATGATCAAGATGCAGAAACTGGCTCTTCAGGTGCTGGGCCTAGCGAGGAGGAAGATCCTGAAGAGGCTGAACTGAAGAAGGAAGCTTTGAAGGCAGCTCAAGAAGCTGTCTCTAAGCAGAGAAAGTTGACGAGCGCTTTTGATAGTGAATGCTTGAGGCTGCGTCAGGCTGATGAAACTGATGCACTTTCACAGGAAGTTGCAGGAGCAAGTAACATTGATTTGCAAACCCCTTCAACCATGCCTGTGGCATCAACAGTTCGGACACCAGAAATGTTTAGAGGCCGTCTTAAAGAATATCAGCTAAAAGGTCTTCAGTGGTTAGTTAATTGTTATGAGCAGGGTCTGAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACCATTCAAGCCATGGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGGTTGTTGCACCTTCATCAGTATTGAACAATTGGAAAGAAGAACTTGAGCGCTTCTGCCCTGAAATGAAAGCTCTTCCTTACTGGGGTGGGCTTCATGAGCGAACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGCAGGGAAGCGAAATTCCACATTCTCATTACAAGCTACCAGCTAATAGTATCTGATGAGAAGTATTTTCGGCGTGTGAAATGGCAGTACATGGTATTAGATGAAGCTCAGGCAATTAAAAGTTCAAACAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCCTGCTGCTGACCGGTACACCCATTCAAAATAATATGGCAGAATTATGGGCTCTTCTGCACTTCATTATGCCAACTTTATTTGATAACCACGAACAATTTAATGAATGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTTTGAATGAACATCAACTTAACAGACTGCATTCTATTCTAAAGCCTTTCATGCTGCGACGAGTTAAAAAAGATGTAGTATCCGAACTGACTAGAAAAATAGAGGTTACAGTGCACTGCAAGCTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCAATCAAGAATAAAATATCTCTTGCTGATTTGTTTGATAGTAATCGTGGGCAGCTCAACGATAAGAGAATTGATAATTTAATGAATATTGTTATTCAACTACGAAAGGTTTGCAACCATCCGGAGTCGTTTGAGAGGAGCGAGGGAACCACATTCTATAATTTTGCAGAGATTCCAAGTTCCTTTCCGCCTCCTCCATTTGGGGAGTTGGAGGATGTATACTATGCTGGGGGTCACAATCCAATATCATACAAGATGCCAAAACTTGTCCATCAAGAAATCATGCAAGGTTCTAAATTGCTTAATTCAACAATTGCTCGTGGTGTTAGCAGAGAATTTTTTCAAAGACATTTTAATATTTACAGGCCGGAGAATGTTTTTCAATCCATCTTCTCTGAAGGGAATAAATCAAATGCGTCATTTATGAAAAGTGGAACTTTTGGTTTTACCCATTTGATGGATTTGTCCCCACAGGAGGTGATGTTTTCAGCTACTGGTTCTTTTATGGAGCAAGTACTGTTTTCTATCGTAAGATGGGAACAGAAATTTATCAATGAAGTTGTGGACTTCGTAACGGAGACTGTAGATAATGATCCTGAATACGGTTACCTTGAAGCAGGAAAAGTGAGGGCTGTTTCCCGAATGTTATTGGTGCCAACAAAATCTGAGACTAAGATTTTTCAAAGAAGATTTGCTACTGGCCCCAGCCATGCCCCTTTTGAGGCATTGGTTGTCACATATGAAGATAGAATTATATCCAATGCAAGGCTTATTCACTCAGCATACACATATATCCCTCGGACTAGAGCTCCACCAATTGTTGCCCACTGCTCAGACCGAAGCTTCTCCTATAAAACACTGGAAGAGTTGCATGACCCTTGGGTCATGAGGTTGCTTGTGGGATTTGCACGTACATCTGAGTTTAATGGACCTAGAAAGCCAGATGGTCCTCCCCATCATTTAATTCAAGAGATTGATTGTGAACTAACAGTTGCACAGCCTGCTCTTCAGTTAACCTACAAAATTCTAGGTTCGTCTCCCCCCATGCAAAATTTTGACCCAGCGAAACTGATCACTGACTCTGGGAAGCTTCAAACGCTGGACATATTATTAAAACGCTTGCGGGCTGAAAATCACCGTGTTCTCTTGTTTGCTCAGATGACTAGGATGCTGAATATTCTTGAGGACTACATGAACTACAGAAAATATAGATATTTTAGGCTTGATGGATCGACATCTATTCAGGACCGCAGAGACATGGTTAGAGACTTCCAGCAGAGGAATGATGTTTTTGTGTTCTTACTTAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACGGCTGCTGACACAGTAATCTTTTATGAGAATGATTGGAATCCCACGATGGATCAGCAGGCAATGGACAGAGCTCATCGAATCGGTCAAACAAAAGATGTCACTGTGTACAGACTCATATGCAAAGAGACAGTTGAAGAGAATATTCTTCTTAGAGCAAGTCAAAAAAGCACTGTACAGAACCTCGTCATGACTAGTGGTTCTGCTGGTGATGTTTTTGTTGCTGAGGATATTGTATCTTTGCTTCTGGATGATGCGCAGTTGGAGCAGAAATTCAACGGAGTTCCTCTTCAGGTAAATGATAAGCAAAAGAAGAAACAAACGGTGAAGGTTATACGGGTGAATGAAGAAGGAGATGCGACCCTGGAAGATCTAACAGACTCGGGAGCACAGCGCCCACATAATGATATTTTTCTTGATCCAGAGGGACCAAAGCCCAGTAATAAAAAGAGAAAAGCTGCCTCTGTCAAGCAAATCGCATCAAGGGCAAGGAATTTTCAGAAGATTAATGAGCTTAATAGGACAATGCCAACGGAGTATGAGTTGTATGATGATCTAGCGGTCCAGAAACCCAAGAGACCAAAGAAGGCAAAGAAAGTTGGGAATGACAAGTTTGACGACCCTTCTGCTGGAGCAGACCGAATAGGCACCATTTTCACGTGA 4368 0.419 MSEVNLLKKRKLSQNSDDEDRGNFCGTHMTEERYRSMLGEHMQKYKRRYKDTSSSPAQNRVSAHLLKSNTGLKARKLLNEHRRGIHALETTSEWPNDINPQKPVNYRDAEFRPQYGSDRTIYEPASLDIGDGVTYKIPPTYDQLAAMMNLPSFSDILVEEFHLKGTLDLGSLAAMMASDKRGGTRNRAGMGETLPQYDSLQARLKAMSASNSPHQFSLKVSDIGLNSSIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDAYEIIERSLPKKQKVKKDPSLIEKEEMERIGKVWVNIVRREIPKHYRFFTGFHRKQLADAKRFSENCQREACSVRMKASRSLKFMKSAPIRTRKLARDVLLFWKRSDKEMAELRKKEEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSDVLPTVDEKADDQDAETGSSGAGPSEEEDPEEAELKKEALKAAQEAVSKQRKLTSAFDSECLRLRQADETDALSQEVAGASNIDLQTPSTMPVASTVRTPEMFRGRLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPSSVLNNWKEELERFCPEMKALPYWGGLHERTVLRKSINPKDLYRREAKFHILITSYQLIVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDNHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTRKIEVTVHCKLSSRQQAFYQAIKNKISLADLFDSNRGQLNDKRIDNLMNIVIQLRKVCNHPESFERSEGTTFYNFAEIPSSFPPPPFGELEDVYYAGGHNPISYKMPKLVHQEIMQGSKLLNSTIARGVSREFFQRHFNIYRPENVFQSIFSEGNKSNASFMKSGTFGFTHLMDLSPQEVMFSATGSFMEQVLFSIVRWEQKFINEVVDFVTETVDNDPEYGYLEAGKVRAVSRMLLVPTKSETKIFQRRFATGPSHAPFEALVVTYEDRIISNARLIHSAYTYIPRTRAPPIVAHCSDRSFSYKTLEELHDPWVMRLLVGFARTSEFNGPRKPDGPPHHLIQEIDCELTVAQPALQLTYKILGSSPPMQNFDPAKLITDSGKLQTLDILLKRLRAENHRVLLFAQMTRMLNILEDYMNYRKYRYFRLDGSTSIQDRRDMVRDFQQRNDVFVFLLSTRAGGLGINLTAADTVIFYENDWNPTMDQQAMDRAHRIGQTKDVTVYRLICKETVEENILLRASQKSTVQNLVMTSGSAGDVFVAEDIVSLLLDDAQLEQKFNGVPLQVNDKQKKKQTVKVIRVNEEGDATLEDLTDSGAQRPHNDIFLDPEGPKPSNKKRKAASVKQIASRARNFQKINELNRTMPTEYELYDDLAVQKPKRPKKAKKVGNDKFDDPSAGADRIGTIFT 1455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4838g00105 1455 PANTHER HELICASE SRCAP-RELATED 28 470 - -
Pral4838g00105 1455 MobiDBLite consensus disorder prediction 433 458 - -
Pral4838g00105 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 514 759 IPR027417 -
Pral4838g00105 1455 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1155 1305 IPR001650 -
Pral4838g00105 1455 Pfam Helicase conserved C-terminal domain 1155 1264 IPR001650 -
Pral4838g00105 1455 MobiDBLite consensus disorder prediction 1360 1387 - -
Pral4838g00105 1455 Pfam DNA-binding domain 288 420 IPR020838 GO:0003677
Pral4838g00105 1455 FunFam Putative DNA helicase INO80 503 781 - -
Pral4838g00105 1455 ProSiteProfiles DBINO domain profile. 293 421 IPR020838 GO:0003677
Pral4838g00105 1455 MobiDBLite consensus disorder prediction 1425 1455 - -
Pral4838g00105 1455 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 543 714 IPR014001 -
Pral4838g00105 1455 MobiDBLite consensus disorder prediction 1 26 - -
Pral4838g00105 1455 Coils Coil 368 407 - -
Pral4838g00105 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 761 1303 IPR027417 -
Pral4838g00105 1455 CDD SF2_C_SNF 1143 1275 - -
Pral4838g00105 1455 Gene3D - 504 783 IPR038718 -
Pral4838g00105 1455 Pfam SNF2-related domain 546 832 IPR000330 GO:0005524|GO:0140658
Pral4838g00105 1455 Gene3D - 1120 1363 IPR027417 -
Pral4838g00105 1455 SMART helicmild6 1181 1264 IPR001650 -
Pral4838g00105 1455 SMART ultradead3 527 722 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4838g00105 Pral-Chr4838 670816 680538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4838g00105 552 830 RAD5 or RAD16-like Gene Family AT5G43530 29.245 1.30e-26 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4838g00105 SNF2_N 9.7e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4838g00105 K11665 - gmx:100780615 2207.56