Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4838g00088 ATGGAATGGGATCAAGACTCTATTCATCCGGCACCCAGCTCAGATGACAAGTCCATGGTTTTGAATGTGAAGCCATTGCGAGCTCTTGTTCCTGTTTTCCCTTCACGACCGAACCTTTCTTCATCTTCAACACCTCATGTTGGCTCTCCTCTTGTTTCTATTTCTCCACCTGGGATGGCTCCTTTCTATCCATTCTTCTCCTCGCTGGACTCCCAGACGCTCTCTCATCAAAACCCACAAAACCAGATACCGAGAGCAGTTCCAATCAGTACAATTAGAACACCATCTTCTACAAATGAGATGCATGGAGGTGAAAGAGAAGGAAGCAGCTCCCAGGCGAAGAAGAAGAAGAAGGGAAAGCAGGATGGTGGTTCTGCGTCAGCTGATGTCGATGAAGATAAGGTGGTTGATGATATTCTCAAATCAATCAATCCTTTAGTTTTGGATACATTACATCAACCTGACAGTGGGAAGGACTCAGTTGCATATACACTAATGATATATGAAATACTGAGAAGAAAGATCGCACAAATTGAAGAGGCAAAAGAAGGGGATGGAGTAGTCGTGAAGCGATCTGATTTAAGAGCAGGAACTGTTATGTTGAGCAAAGGGCTTAGGACTAATAAAGAGAGACGTGTTGGAACTGTACCTGGTGTTCAAGTTGGAGATATTTTTTATTTCAGAATGGAATTATGCGTGGTGGGATTGCATGCTCCATCCATGTCTGGAATTGATTACATGGGCGTCAAAGTTAGTCAGGAGGACGAGCCATTAGCAATCAGCGTCATATCATCTGGAGGATATGAAGATAATGTTGATGATGGGGATGTGCTGATTTACAGTGGCCAAGGTGGGGCTTGCCAGAGTAAAGAAAAGAGTGATCAGAAGCTTGAAAGGGGGAATCTTGCATTAGAAAAGAGTCTGCATCGAGGTAATGAAGTAAGAGTCACAAGGGGTCTAAAGGAGTCTATGAATTCCAGAACAAAGGTATATGTCTATGATGGTCTTTACAAGATCCAAGAATCTTGGGTGGAGAAGGGAAAATCAGGTTTCAATGTGTTTAAGTATAGATTAGTCAGGTTGCCTGGGCAGCCTGAAGGATATATGATATGGAAAGCAATTCAGCAATGGGCTGACAAGTCTACCTTGAGATCCGGGCTTATATTGCCTGATCTTACTTCTGGAGCAGAAAATTTACCTGTTTGTCTTGTAAATGGTGTTGATGATGAGAAGGATCCCGCATGTTTCACTTACTGTAATACTCTTAAGAATCTGAAACCAACAAATCCTGCGGAACCATCTACTGGTTGTAACTGCATTGGTGGATGCCTGCCCAGTAATTTGAGCTGTACTTGCATTCAAAAAAATGGGGGCTGTCTGCCATATTCTGCAAATGGGGTACTCACGGACCTGAAGTCTGTGATCTATGAGTGTGGTCCTTCTTGCCAGTGCCCTCCTAGTTGTCGAAACCGAATTTCACAAGGTGGATTGAAACTTCGTTTGGAGGTTTTCAAGACTAAGGATAAAGGGTGGGGTCTAAGATCCTGGGATCCTATTCGTGCAGGAACTTTTATATGTGAGTATGTAGGAGAAGTCATAGACAATGCCAGAGTTGAGGAACTTGGTGGTGAAAATGACGATGATTATTATGTTTTTGACACTACACGCTGTTATCAGCAACTGGAAATCTTTCCTGGTGACACTCAAGCAACTAAGATTCCAGATTCACTCTATATAACTGCGAGAAATAATGGAAATGTCGCTCGCTTCATGAACCATAGTTGCTCTCCAAATGTGTTCTGGCGTCCCATTTTACGCACAAATACAGATCAGTCTGATTTCCACGTTGCTTTTCATGCAATCAGGCACATCCCTCCTATGACAGAGTTAACTTATGATTATGGGATAGTTCAGCCCCTCACAGAGAGCCACAAGAAAAAGGAATGCCGTTGTGGATCGGTGAAATGCAGGGGATATTTTTGTTGA 1986 0.4305 MEWDQDSIHPAPSSDDKSMVLNVKPLRALVPVFPSRPNLSSSSTPHVGSPLVSISPPGMAPFYPFFSSLDSQTLSHQNPQNQIPRAVPISTIRTPSSTNEMHGGEREGSSSQAKKKKKGKQDGGSASADVDEDKVVDDILKSINPLVLDTLHQPDSGKDSVAYTLMIYEILRRKIAQIEEAKEGDGVVVKRSDLRAGTVMLSKGLRTNKERRVGTVPGVQVGDIFYFRMELCVVGLHAPSMSGIDYMGVKVSQEDEPLAISVISSGGYEDNVDDGDVLIYSGQGGACQSKEKSDQKLERGNLALEKSLHRGNEVRVTRGLKESMNSRTKVYVYDGLYKIQESWVEKGKSGFNVFKYRLVRLPGQPEGYMIWKAIQQWADKSTLRSGLILPDLTSGAENLPVCLVNGVDDEKDPACFTYCNTLKNLKPTNPAEPSTGCNCIGGCLPSNLSCTCIQKNGGCLPYSANGVLTDLKSVIYECGPSCQCPPSCRNRISQGGLKLRLEVFKTKDKGWGLRSWDPIRAGTFICEYVGEVIDNARVEELGGENDDDYYVFDTTRCYQQLEIFPGDTQATKIPDSLYITARNNGNVARFMNHSCSPNVFWRPILRTNTDQSDFHVAFHAIRHIPPMTELTYDYGIVQPLTESHKKKECRCGSVKCRGYFC 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4838g00088 661 Gene3D - 196 382 IPR036987 -
Pral4838g00088 661 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 87 653 - -
Pral4838g00088 661 Gene3D SET domain 383 660 IPR046341 -
Pral4838g00088 661 Pfam SET domain 510 635 IPR001214 GO:0005515
Pral4838g00088 661 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 84 660 IPR025794 GO:0016571
Pral4838g00088 661 SMART preset_2 389 483 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral4838g00088 661 ProSiteProfiles YDG domain profile. 214 360 IPR003105 -
Pral4838g00088 661 SMART G9a_1 209 364 IPR003105 -
Pral4838g00088 661 MobiDBLite consensus disorder prediction 73 106 - -
Pral4838g00088 661 SUPERFAMILY SET domain 375 651 IPR046341 -
Pral4838g00088 661 ProSiteProfiles SET domain profile. 499 635 IPR001214 GO:0005515
Pral4838g00088 661 SMART set_7 499 641 IPR001214 GO:0005515
Pral4838g00088 661 Pfam Pre-SET motif 393 491 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral4838g00088 661 MobiDBLite consensus disorder prediction 73 130 - -
Pral4838g00088 661 MobiDBLite consensus disorder prediction 107 130 - -
Pral4838g00088 661 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 197 379 - -
Pral4838g00088 661 Pfam SAD/SRA domain 213 364 IPR003105 -
Pral4838g00088 661 SUPERFAMILY PUA domain-like 196 378 IPR015947 -
Pral4838g00088 661 ProSiteProfiles Pre-SET domain profile. 435 496 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral4838g00088 661 ProSiteProfiles Post-SET domain profile. 645 661 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4838g00088 Pral-Chr4838 578527 580810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4838g00088 10 660 Su(var)3-9 homologs AT1G73100 46.939 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral4838g00088 SAD_SRA 4.5e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4838g00088 K24405 - gmx:100805932 909.827